Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0430
         (656 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   6.7  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   6.7  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   6.7  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   6.7  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.9  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   8.9  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
 Frame = -2

Query: 205 SHHLPKLHQQVQ--TLHSRQ 152
           SHH P +H Q++   LH  Q
Sbjct: 91  SHHGPPIHHQIRPPILHDTQ 110


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
 Frame = -2

Query: 205 SHHLPKLHQQVQ--TLHSRQ 152
           SHH P +H Q++   LH  Q
Sbjct: 91  SHHGPPIHHQIRPPILHDTQ 110


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
 Frame = -2

Query: 205 SHHLPKLHQQVQ--TLHSRQ 152
           SHH P +H Q++   LH  Q
Sbjct: 91  SHHGPPIHHQIRPPILHDTQ 110


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
 Frame = -2

Query: 205 SHHLPKLHQQVQ--TLHSRQ 152
           SHH P +H Q++   LH  Q
Sbjct: 91  SHHGPPIHHQIRPPILHDTQ 110


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +3

Query: 153 WRECSVCTC 179
           WREC   TC
Sbjct: 886 WRECDKATC 894


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 560 ESESSLLHQDYSVHL*WN 613
           ES   L  Q Y+VHL W+
Sbjct: 278 ESIIDLSQQTYNVHLMWS 295


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.134    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,215
Number of Sequences: 336
Number of extensions: 3244
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)