Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0430
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    57   2e-10
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   1.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.9  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 56.8 bits (131), Expect = 2e-10
 Identities = 52/205 (25%), Positives = 99/205 (48%), Gaps = 8/205 (3%)
 Frame = +1

Query: 25  VALVTGGSSGLGKATAELLVKQGGRVVICDLPSTKGQNTAKSL-GENAVFAPV--DVTSE 195
           VALVTG +SG+GK   E LV +G +V+       K +   + L  +     P+  D++++
Sbjct: 9   VALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSKPGKLVPLQCDLSNQ 68

Query: 196 DDVKEALQITLDKFGRLDALINCAGVASASRVYNFKKEQPFDLNIFQNTIQVNLIGTFNV 375
           +D+ + ++      G +D LIN A +     + N   ++  D   ++    +NL+G   +
Sbjct: 69  NDILKVIEWVEKNLGAIDILINNATINIDVTLQN---DEVLD---WKKIFDINLLGLTCM 122

Query: 376 IRLAVGLIGKNAPDADGQRGVVINTASVAAFD---GQIGQAAYSASKAGVVGMTLPLARD 546
           I+  + L+ K   +     G+++N    +  +       + AY ASK  +  +T  L  +
Sbjct: 123 IQEVLKLMKKKGIN----NGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSE 178

Query: 547 MA--KQGIRVVTIAPGLFRTPMMEQ 615
           +A  +  I+V++I+P L  T M  Q
Sbjct: 179 LAQCESNIKVISISPDLVETDMTAQ 203


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 410 HQTLTDNAESLSTRPVSLHLMDRSD 484
           H T   N +S+  +  +LH MD SD
Sbjct: 319 HSTDIQNCDSVKIKFETLHTMDSSD 343


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 211 PPSHHLPKLHQQVQTLHSRQ 152
           PP HH     Q +Q LH RQ
Sbjct: 349 PPHHHHHHQTQSLQHLHYRQ 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.134    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,999
Number of Sequences: 438
Number of extensions: 3867
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)