Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0428
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    27   2.6  
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...    25   7.9  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    25   7.9  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 478 SFPIDIVR*NMVLLSQSLIKYSNGSQFG 561
           S+P+D +R  M++ S   +KYS+  + G
Sbjct: 250 SYPLDTIRRRMMMTSGEAVKYSSSFECG 277


>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 481 FPIDIVR*NMVLLSQSLIKYSNGSQFGIVHKE 576
           FP  ++R   V+L+  ++K   G++ GIV K+
Sbjct: 46  FPRQVIRYGSVVLTHIVMKLPRGARSGIVAKK 77


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 254 GNKDFTKKKIHNYFPNKMEKKYSKFYLNFEL 162
           GNKD T KK+ NY    +   Y   +LNF +
Sbjct: 432 GNKD-TIKKLSNYDRRAISNPYVSNHLNFNV 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,408
Number of Sequences: 5004
Number of extensions: 56909
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)