Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0428
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0112 - 839048-839552,839638-839720,839828-839982,840078-84...    31   0.67 
01_05_0342 - 21147940-21148213,21149626-21149697,21150273-211503...    31   0.88 
04_04_1268 - 32262994-32263017,32263411-32263488,32263653-322638...    28   8.2  
02_01_0050 - 352017-354272                                             28   8.2  

>02_01_0112 -
           839048-839552,839638-839720,839828-839982,840078-840557,
           840855-841097,841189-841403,841489-841756,842477-842525
          Length = 665

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = -2

Query: 383 KLSNEKNSCLESLGGSFILIGR*ILFLDRKLYWW*ANRSRNRKGNKDFTKKKIHNYFPNK 204
           K   EKN  +  LGG    +   IL +D  ++   A       G +DF ++ I  YF   
Sbjct: 217 KKGGEKNILVFDLGGGTFDVS--ILTIDNGVFEVLATNGDTHLGGEDFDQR-IMEYFIKL 273

Query: 203 MEKKYSK 183
           ++KKYSK
Sbjct: 274 IKKKYSK 280


>01_05_0342 -
           21147940-21148213,21149626-21149697,21150273-21150397,
           21150625-21150684,21150824-21150902,21151041-21151126,
           21151224-21151544
          Length = 338

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 12/35 (34%), Positives = 27/35 (77%), Gaps = 2/35 (5%)
 Frame = +1

Query: 319 RPIKMKLPP--NDSRHEFFSLLNLKYQIRSKLVNE 417
           +PIKM++ P  ++  H+FF+L+ L+Y+ +S ++++
Sbjct: 303 QPIKMQIDPKMSEGAHDFFNLIYLEYRQQSTVIDK 337


>04_04_1268 -
           32262994-32263017,32263411-32263488,32263653-32263800,
           32263890-32264127,32264210-32264420,32264499-32264680,
           32264765-32264866,32265009-32266317,32266906-32266988,
           32267436-32267559
          Length = 832

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 374 NEKNSCLESLGGSFILIGR*ILFLDRKLYW 285
           +E N+ LES GGS +L+G  +L +   L+W
Sbjct: 32  SESNTPLES-GGSIVLVGSLVLLVTVVLFW 60


>02_01_0050 - 352017-354272
          Length = 751

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 550 SQFGIVHKECDFFPEKKKKQNRF-INLHYFIVYTLKDFSGHTKIVDRF 690
           S+ G+V K CD+F   +K      I+ HY  +  L   SG  K  + F
Sbjct: 491 SRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEF 538


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,812,413
Number of Sequences: 37544
Number of extensions: 284331
Number of successful extensions: 530
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)