Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0427
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1376 - 26528208-26528279,26529690-26529986                       87   1e-17
01_06_0963 + 33441731-33442096,33442175-33442270                       62   4e-10
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849...    48   5e-06
02_03_0315 - 17610605-17610855,17611304-17611370,17612876-176129...    48   7e-06
07_03_1180 - 24601631-24602142,24602518-24602581,24602811-246028...    38   0.010
03_04_0091 + 17241555-17241602,17241685-17241822,17241901-172421...    31   0.63 

>08_02_1376 - 26528208-26528279,26529690-26529986
          Length = 122

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 52/119 (43%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
 Frame = +2

Query: 62  DAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKI 241
           DA+ K FV+ YY  FD    R  LV++Y  + S +TFEG Q  GA  I  KL SL F + 
Sbjct: 4   DAVAKAFVEHYYRTFD--TNRPALVSLYQ-DGSMLTFEGQQFLGAAAIAGKLGSLPFAQC 60

Query: 242 TRIVTAVDSQPMF-DGGVLINVLGRLKCDEDP-PHLYMQTFVLKPLGDSFYVQHDIFRL 412
              +  VD QP    GG+L+ V G L+   D  P  + Q F L P G +FYVQ+D+FRL
Sbjct: 61  HHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPAGGNFYVQNDMFRL 119


>01_06_0963 + 33441731-33442096,33442175-33442270
          Length = 153

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
 Frame = +2

Query: 56  QYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQ 235
           Q D + + FV+ YY  FD    RA L  +Y  +TS ++FEG  + GA +I  KL  L F+
Sbjct: 24  QCDVVARAFVEYYYQTFD--TNRAALAALYG-QTSMLSFEGHMVAGAEEIGRKLLGLPFE 80

Query: 236 KITRIVTAVDSQ--PMFDGGVLINVLGRLKCDEDPPHLYMQTF 358
           +    V  VD Q  P F GG+L+ V G L+   +   L    F
Sbjct: 81  QCRHAVCTVDCQPTPSFPGGILVFVSGNLQLAGEEHQLRFSQF 123


>04_03_0630 -
           18182681-18182931,18183397-18183463,18184899-18184964,
           18185057-18185178,18185263-18185425,18186082-18186329,
           18186418-18186751,18186857-18187000,18187079-18187144
          Length = 486

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
 Frame = +2

Query: 53  PQYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFM---TFEGVQLQGAVKIMEKLNS 223
           P    +G  FV QYY +     Q  +LV+ +  + S +             V  ME +N+
Sbjct: 18  PSAQVVGNAFVHQYYNILH---QSPDLVHRFYQDGSRIGRPASPAAAEMDTVTTMEAINA 74

Query: 224 -LTFQKITRI-VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQH 397
            +    I R  + AVD+Q    GGV + V G L   +D    + Q+F L P    ++V +
Sbjct: 75  KIVSMDIVRAEIKAVDAQESLGGGVTVLVTGHLTGSDDVRREFSQSFFLAPQEKGYFVLN 134

Query: 398 DIFR 409
           DI R
Sbjct: 135 DILR 138


>02_03_0315 -
           17610605-17610855,17611304-17611370,17612876-17612941,
           17613037-17613158,17613245-17613428,17614262-17614494,
           17614580-17614913,17615043-17615186,17615303-17615344
          Length = 480

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
 Frame = +2

Query: 50  NPQYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQG---AVKIMEKLN 220
           +P    +G  FVQQYY +     Q  +LV  +  + S +        G   +V  ME +N
Sbjct: 9   SPSAQVVGNAFVQQYYQILH---QSPDLVYRFYQDASRLGRPPADRYGDMVSVTTMEAIN 65

Query: 221 S-LTFQKITRI-VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQ 394
             +    ++R  +  VDSQ    GGV + V G L   +     + Q+F L P    ++V 
Sbjct: 66  EKIMAMDMSRAEIKTVDSQESLGGGVTVLVTGHLTVRDGVCREFSQSFFLAPQEKGYFVL 125

Query: 395 HDIFR 409
           +D+FR
Sbjct: 126 NDMFR 130


>07_03_1180 -
           24601631-24602142,24602518-24602581,24602811-24602876,
           24602949-24603070,24603170-24603344,24603466-24603701,
           24603781-24604129,24605009-24605146,24605242-24605289
          Length = 569

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
 Frame = +2

Query: 47  LNPQYDAIGKGFVQQYYT-LFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLN- 220
           L+PQ   IG  FVQQYY  L   P Q   +   Y+  ++    +      +V  +  +N 
Sbjct: 12  LSPQM--IGNAFVQQYYNVLHSSPGQ---VCKFYHDSSTLGRPDSNGTMTSVTTLTAIND 66

Query: 221 ---SLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPL-GDSFY 388
              S  F      +  VD+Q   +GGV I V G +  +    H + Q+F L P     ++
Sbjct: 67  EFLSTDFSSCLIKLENVDAQLSLNGGVHILVTGSIGHNGTMRHRFSQSFFLAPQESGGYF 126

Query: 389 VQHDIFR 409
           V +D+ R
Sbjct: 127 VLNDMLR 133


>03_04_0091 +
           17241555-17241602,17241685-17241822,17241901-17242198,
           17242281-17242513,17242632-17242827,17242911-17243032,
           17243100-17243165,17243373-17243436,17243851-17244176
          Length = 496

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 37/125 (29%), Positives = 51/125 (40%), Gaps = 4/125 (3%)
 Frame = +2

Query: 47  LNPQYDAIGKGFVQQYY-TLFDDPAQRANLVNMYNVETSFMTFEGVQ--LQGAVKIMEKL 217
           ++PQ   I   FVQQYY  L + P Q        ++        GV   +     I + +
Sbjct: 12  ISPQ--VISGAFVQQYYHILHETPDQVYKFYQDASI-VGRPDSNGVMKYVSTTADINKII 68

Query: 218 NSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFY-VQ 394
            S+ F      +   D+Q     GVLI V G L   E     + Q+F L P     Y V 
Sbjct: 69  LSMDFSNYLTEIETADAQLSHQDGVLIVVTGSL-TSEGICRRFTQSFFLAPQESGGYVVL 127

Query: 395 HDIFR 409
           +DIFR
Sbjct: 128 NDIFR 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,157,343
Number of Sequences: 37544
Number of extensions: 341015
Number of successful extensions: 600
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)