Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0427
         (670 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              78   7e-15
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)                  62   3e-10
SB_7009| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.64 
SB_26779| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_58821| Best HMM Match : RecR (HMM E-Value=1.6)                      29   3.4  
SB_28307| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_34085| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 35/91 (38%), Positives = 62/91 (68%)
 Frame = +2

Query: 47  LNPQYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSL 226
           ++  ++ + K FV+ YY++FD  + R NL  +Y    S +TFEG Q+QG   I+ KL S+
Sbjct: 113 MSQPFEQVAKQFVEYYYSVFD--SNRNNLAPLYQ-PGSMLTFEGAQIQGTEAIVAKLVSM 169

Query: 227 TFQKITRIVTAVDSQPMFDGGVLINVLGRLK 319
            FQ++  ++T+ D+QP+ +GG+++ V+G+LK
Sbjct: 170 PFQQVLHVITSQDAQPLPNGGIIVFVMGQLK 200


>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
          Length = 662

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
 Frame = +2

Query: 53  PQYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFM---TFEGVQ---LQGAVKIMEK 214
           P    +G+ FV+QYYTL +   +   L   Y   + F+      G Q   + G   I EK
Sbjct: 6   PSPQCVGREFVRQYYTLLNQ--EPLKLHRFYTKHSWFLHGRAENGPQENPIMGQEAIYEK 63

Query: 215 LNSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGD--SFY 388
           +  L F      +  VDS      GV++ V G L  +  P   +MQTFVL P  D   +Y
Sbjct: 64  IKDLNFVDCRTKILQVDSHSTLGSGVVVQVSGELSNNGQPMRKFMQTFVLAPGEDIRKYY 123

Query: 389 VQHDIFR 409
           V +DIFR
Sbjct: 124 VHNDIFR 130


>SB_7009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 300

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 330 SSSHFNLPRTLIKTPPSNIGWESTAVTILVIF*KVKLFNFSIIL 199
           + + FN  R     PPSN+ W   AV + ++F  VK  N+ + L
Sbjct: 21  NDNFFNQNRKKFGAPPSNLVWALYAVFVGILFSVVKFLNYRLHL 64


>SB_26779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 87  NNITHCSMIRLNGQILLICTMLKLHS*PLREYNCRVLL 200
           N + H +M+  +G   L CT+++ H       NCR LL
Sbjct: 315 NGVLHTAMLNHDGGFELQCTLVRTHPNSSNIVNCRFLL 352


>SB_58821| Best HMM Match : RecR (HMM E-Value=1.6)
          Length = 223

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +2

Query: 527 IIFFLYLFRQRIYEIERTRRL*NYDNDRFSDRTG*SKMRIWFSLHRKW 670
           I + LY+ +QR+ +IE  + + N DND  + +   +K+R +     K+
Sbjct: 20  IKYILYIIKQRLEDIEFQKWISNVDNDNRNKQGQSNKLRTYRKFKSKY 67


>SB_28307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 158 KFQHCTY*QDLPVEPDHRTMCNIVAQNL 75
           KF  C Y +++ VE DH+ +  IV + L
Sbjct: 418 KFDQCVYGREVTVESDHKPLAAIVTKPL 445


>SB_34085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +2

Query: 59  YDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEG-VQLQGAVKIMEKLNSLTFQ 235
           Y  I + F+Q  Y +   P +     N  N  TSF   +G  Q      ++  +++ TF 
Sbjct: 171 YGVIIRSFLQLVYLVLRVPCRSLQFTNASNKYTSFGQIQGDAQPSERQSLLRSISNQTFY 230

Query: 236 KITRIVT 256
             T+ V+
Sbjct: 231 SSTQCVS 237


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,830,047
Number of Sequences: 59808
Number of extensions: 427580
Number of successful extensions: 698
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)