Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0427
(670 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g27310.1 68414.m03327 nuclear transport factor 2 (NTF2), puta... 81 5e-16
At1g27970.1 68414.m03426 nuclear transport factor 2 (NTF2), puta... 80 1e-15
At1g11570.1 68414.m01328 nuclear transport factor 2 (NTF2), puta... 63 1e-10
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 60 2e-09
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 60 2e-09
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 50 1e-06
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 48 7e-06
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 46 3e-05
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 45 4e-05
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 44 9e-05
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 42 5e-04
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 35 0.043
At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) famil... 32 0.30
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 32 0.30
At4g10560.1 68417.m01729 DC1 domain-containing protein contains ... 27 8.5
At3g07610.1 68416.m00911 transcription factor jumonji (jmjC) dom... 27 8.5
>At1g27310.1 68414.m03327 nuclear transport factor 2 (NTF2),
putative similar to Swiss-Prot:P33331 nuclear transport
factor 2 (NTF-2) (Nuclear transport factor P10)
[Saccharomyces cerevisiae]
Length = 122
Score = 81.4 bits (192), Expect = 5e-16
Identities = 50/119 (42%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Frame = +2
Query: 62 DAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKI 241
DA+ K FV+ YY+ FD A R LV++Y E S +TFEG ++QG+ I+ KL L FQ+
Sbjct: 4 DAVAKAFVEHYYSTFD--ANRPGLVSLYQ-EGSMLTFEGQKIQGSQNIVAKLTGLPFQQC 60
Query: 242 TRIVTAVDSQPMFD-GGVLINVLGRLK-CDEDPPHLYMQTFVLKPLGDSFYVQHDIFRL 412
+T VD QP GG+L+ V G L+ E + Q F L ++YV +DIFRL
Sbjct: 61 KHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLISNQGNYYVFNDIFRL 119
>At1g27970.1 68414.m03426 nuclear transport factor 2 (NTF2),
putative similar to Swiss-Prot:P33331 nuclear transport
factor 2 (NTF-2) (Nuclear transport factor P10)
[Saccharomyces cerevisiae]
Length = 126
Score = 80.2 bits (189), Expect = 1e-15
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Frame = +2
Query: 62 DAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKI 241
DA+ K FV+ YY+ FD R L +Y E S +TFEG ++QG I+ KL SL FQ+
Sbjct: 7 DAVSKAFVEHYYSTFD--TNRVGLAGLYQ-EASMLTFEGQKIQGVQSIVAKLTSLPFQQC 63
Query: 242 TRIVTAVDSQPMFD-GGVLINVLGRLK-CDEDPPHLYMQTFVLKPLGD-SFYVQHDIFRL 412
++ VD QP G+L+ V G L+ E+ + Q F L P SFYV +DIFRL
Sbjct: 64 KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRL 123
>At1g11570.1 68414.m01328 nuclear transport factor 2 (NTF2),
putative similar to Swiss-Prot:P33331 nuclear transport
factor 2 (NTF-2) (Nuclear transport factor P10)
[Saccharomyces cerevisiae]
Length = 127
Score = 63.3 bits (147), Expect = 1e-10
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Frame = +2
Query: 62 DAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKI 241
+ + FV YY LFD+ R++L ++YN TS +TFEG + G I KL L F +
Sbjct: 10 EEVASAFVNHYYHLFDN--DRSSLSSLYN-PTSLLTFEGQTIYGVDNISNKLKQLPFDQC 66
Query: 242 TRIVTAVDSQPMF----DGGVLINVLGRLKC-DEDPPHLYMQTFVL 364
+++ VDSQP GG+L+ V G ++ ED P + Q ++L
Sbjct: 67 HHLISTVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQVYLL 112
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 59.7 bits (138), Expect = 2e-09
Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 7/127 (5%)
Frame = +2
Query: 50 NPQYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVK-------IM 208
+P + +G+ FV+QYY + Q LV+ + ++SF+T V GAV I
Sbjct: 9 SPGAEVVGRAFVEQYYHILH---QSPGLVHRFYQDSSFLTRPDVT--GAVTTVTTMQAIN 63
Query: 209 EKLNSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFY 388
+K+ SL ++ T + D+Q + GV++ V GRL +++ + Q+F L P ++
Sbjct: 64 DKILSLKYEDYTAEIETADAQESHERGVIVLVTGRLTGNDNVRKKFSQSFFLAPQDKGYF 123
Query: 389 VQHDIFR 409
V +D+FR
Sbjct: 124 VLNDVFR 130
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 59.7 bits (138), Expect = 2e-09
Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 7/127 (5%)
Frame = +2
Query: 50 NPQYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVK-------IM 208
+P + +G+ FV+QYY + Q LV+ + ++SF+T V GAV I
Sbjct: 9 SPGAEVVGRAFVEQYYHILH---QSPGLVHRFYQDSSFLTRPDVT--GAVTTVTTMQAIN 63
Query: 209 EKLNSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFY 388
+K+ SL ++ T + D+Q + GV++ V GRL +++ + Q+F L P ++
Sbjct: 64 DKILSLKYEDYTAEIETADAQESHERGVIVLVTGRLTGNDNVRKKFSQSFFLAPQDKGYF 123
Query: 389 VQHDIFR 409
V +D+FR
Sbjct: 124 VLNDVFR 130
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 50.4 bits (115), Expect = 1e-06
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Frame = +2
Query: 62 DAIGKGFVQQYYTL-FDDPAQRANLVNMYNVETSFMTFEG-----VQLQGAVKIMEKLNS 223
+ IG FV++YY L + P+Q V+ + ++ S + G V ++ I E++ S
Sbjct: 13 NTIGNSFVEKYYNLLYKSPSQ----VHQFYLDDSVLGRPGSDGEMVSVKSLKAINEQIMS 68
Query: 224 LTFQKITRI-VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHD 400
++ I++I + DSQ + GV+ V G L E + Q+F L PL S++V +D
Sbjct: 69 FDYE-ISKIQILTADSQASYMNGVVTLVTGLLTVKEGQRMRFSQSFFLVPLNGSYFVLND 127
Query: 401 IFR 409
+FR
Sbjct: 128 VFR 130
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 47.6 bits (108), Expect = 7e-06
Identities = 37/125 (29%), Positives = 54/125 (43%), Gaps = 11/125 (8%)
Frame = +2
Query: 68 IGKGFVQQYYTLFDDPAQ----------RANLVNMYNVETSFMTFEGVQLQGAVKIMEKL 217
+G FV QYY +F + + R V V F TF+G+ E+L
Sbjct: 16 VGSAFVNQYYYIFCNMPEHLPRFYQEISRVGRVGQDGVMRDFSTFQGIS--------EEL 67
Query: 218 NSLTFQKITRI-VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQ 394
LT+ +T+ D+Q +GG L+ V G +E + QTF L P F+V
Sbjct: 68 KRLTYGDCNSAEITSYDTQESHNGGFLLFVTGYFTLNERSRRKFTQTFFLAPQEKGFFVL 127
Query: 395 HDIFR 409
+DI R
Sbjct: 128 NDILR 132
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 45.6 bits (103), Expect = 3e-05
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Frame = +2
Query: 53 PQYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETS-FMTFEGVQLQGAVKIMEKLNSLT 229
P +G FV QYY + Q+ +L++ + E S + +G + A ++ N +
Sbjct: 6 PGATQVGSYFVGQYYQVLQ---QQPDLIHQFYSEPSRAIRIDGDSTETANSLLHIHNMVM 62
Query: 230 FQKITRI-VTAVDSQPMFDGGVLINVLGRLKCDE-DPPHLYMQTFVLKPLGDSFYVQHDI 403
T I V ++S ++GGVL+ V G +K E ++QTF L P ++V D+
Sbjct: 63 SLNFTAIEVKTINSVESWEGGVLVVVSGSVKTKEFSNRRSFVQTFFLAPQEKGYFVLSDV 122
Query: 404 F 406
F
Sbjct: 123 F 123
>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 422
Score = 45.2 bits (102), Expect = 4e-05
Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 8/130 (6%)
Frame = +2
Query: 44 ALNPQYDAIGKGFVQQYYT-LFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLN 220
+++PQ+ +G GFVQ+YY L+D ++ V+ + +E S ++ G L G + ++ L
Sbjct: 9 SVDPQF--VGNGFVQEYYNHLYDSTSE----VHKFYLEDSMISRPG--LDGEIVTIKSLK 60
Query: 221 SLTFQ------KITRI-VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGD 379
+ Q K +RI + DSQ GV+ V G + ++ + Q+F L
Sbjct: 61 GINDQIMSIDYKSSRIEILTADSQSTLKNGVVTLVTGLVIGNDGGRRKFSQSFFLVSRNG 120
Query: 380 SFYVQHDIFR 409
S++V +D FR
Sbjct: 121 SYFVLNDTFR 130
>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profile: PF00076 RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to
ras-GTPase-activating protein (GAP<120>)
SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
Length = 488
Score = 44.0 bits (99), Expect = 9e-05
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Frame = +2
Query: 62 DAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQ-LQGAVKIMEK-LNSLTFQ 235
D +G FV QYY + + + + G+ + ++ ++K + +L +
Sbjct: 17 DMVGNAFVPQYYHILHQSPEHVHRFYQEISKLGRPEENGLMSITSTLQAIDKKIMALGYG 76
Query: 236 KITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 409
I+ + VD+Q GG ++ V G L + + QTF L P ++V +D+FR
Sbjct: 77 VISAEIATVDTQESHGGGYIVLVTGYLTGKDSVRRTFSQTFFLAPQETGYFVLNDMFR 134
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 41.5 bits (93), Expect = 5e-04
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
Frame = +2
Query: 68 IGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKITR 247
+G F +QYY + + N+Y + T L G +++ L ++
Sbjct: 281 VGDEFARQYYNTLQNAPE-----NLYKLYKDKSTISRPGLDGTMRVFTLSKDLKWRSPGS 335
Query: 248 I----VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 409
+T+V SQ G+L+ V G L +E P + Q F L P + V D+FR
Sbjct: 336 FDSVKITSVTSQDSLKQGILVVVYGYLTFNERPARHFTQVFFLVPQEKGYIVCTDMFR 393
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 35.1 bits (77), Expect = 0.043
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 221 SLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDE-DPPHLYMQTFVLKPLGDSFYVQH 397
SL F I V ++S ++GGVL+ V G +K E ++QTF L P ++V
Sbjct: 4 SLNFTAIE--VKTINSVESWEGGVLVVVSGSVKTKEFSNRRSFVQTFFLAPQEKGYFVLS 61
Query: 398 DIF 406
D+F
Sbjct: 62 DVF 64
>At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 389
Score = 32.3 bits (70), Expect = 0.30
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Frame = +2
Query: 53 PQYDAIGKGFVQQYYTLFDD---PAQR----ANLVNMYNVETSFMTFEGVQLQGAVKIME 211
P I FV+QYY + A+R A++V+ +V + M+F V+ I +
Sbjct: 8 PSAQDIAAEFVRQYYHVLGQLPHEARRLYVDASVVSRPDVTGTMMSFTSVEA-----INK 62
Query: 212 KLNSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVL 364
+ S F+ V +VDSQ + G+ I V+G + ++ + Q F L
Sbjct: 63 HILSCDFENTKFEVLSVDSQNSLEDGIFIMVIGFMTGKDNQRRKFSQMFYL 113
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 32.3 bits (70), Expect = 0.30
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Frame = +2
Query: 53 PQYDAIGKGFVQQYYTLFDD---PAQR----ANLVNMYNVETSFMTFEGVQLQGAVKIME 211
P I FV+QYY + A+R A++V+ +V + M+F V+ I +
Sbjct: 8 PSAQDIAAEFVRQYYHVLGQLPHEARRLYVDASVVSRPDVTGTMMSFTSVEA-----INK 62
Query: 212 KLNSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVL 364
+ S F+ V +VDSQ + G+ I V+G + ++ + Q F L
Sbjct: 63 HILSCDFENTKFEVLSVDSQNSLEDGIFIMVIGFMTGKDNQRRKFSQMFYL 113
>At4g10560.1 68417.m01729 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 703
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 87 NNITHCSMIRLNGQILLICTMLKLHS*PLRE 179
N++TH +I L QI+ + + + LHS P E
Sbjct: 26 NSVTHSEIISLIAQIISLVSSMDLHSQPKPE 56
>At3g07610.1 68416.m00911 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain
Length = 1027
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 134 QDLPVEPDHRTMCNIVAQNLYRLHR 60
QD PD R C+I ++Y LHR
Sbjct: 273 QDAKAFPDERLYCDICKTSIYDLHR 297
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,419,609
Number of Sequences: 28952
Number of extensions: 293844
Number of successful extensions: 549
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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