Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0426
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    29   0.39 
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual      29   0.39 
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    29   0.68 
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    27   1.6  
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po...    27   2.1  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   2.7  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           26   3.6  
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    26   4.8  
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    25   6.3  

>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = -3

Query: 448 FCNTLDYCCVCPLSQTRQSLDVKALDLWIFVMFSHCSFLSSNVLLKLYFLYSYFPIVPL 272
           F +TLD      L    ++L  +  DL   V+F H S    NVL K   L +  P+ P+
Sbjct: 279 FVDTLDDFPDSGLKPLSENLKTRIADLQDMVLFRHGSTGVCNVLAKAMELLNLIPVFPV 337


>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 276

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 223 LRRSGSGLCFTVTFPDTKVRLENM 294
           L + GS +CF + FP+  ++L NM
Sbjct: 148 LGKVGSAICFDIRFPEQAIKLRNM 171


>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 145 SRNHRALSRLSFFDMSRLSSYGICKRKNPPQGRR 44
           +R HR +S LS ++    SS+ +  R N P G R
Sbjct: 67  TRKHRLMSELSMYESVHDSSFNLGTRPNSPLGFR 100


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -2

Query: 338 FFIFKCPSQIVFSLFIFSNR-TFVSGNVTVKHNPLPE-RRNP 219
           FFI  CP+++V  L I +++ T     V V H+  PE  +NP
Sbjct: 328 FFIIHCPNELVIDLVIENHKWTNAPKPVCVIHSVTPEVYKNP 369


>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 371 SLDFCNVFTLFFFIFKCPSQIVFSLF 294
           S D C V+  FF +  C + IVF+ F
Sbjct: 2   STDLCPVYAPFFGVMGCTAAIVFASF 27


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 351 FHIVLFYLQMSFSNCIFFIHIFQSYLCIWKCYS 253
           F  +L+ L +S S  +FF   F+ +L +WK ++
Sbjct: 853 FSFILYNLLISTST-VFFAGFFRRHLMVWKVFA 884


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 361 FVMFSHCSFLSSNVLLKLYFLYSYFPIVP 275
           F+ F + + L +N+LL + F+Y+Y P  P
Sbjct: 279 FIYFENVA-LYTNLLLAIVFVYNYLPSCP 306


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 418 IRNSSPRYCKNKYISFYDN 474
           ++ S P  C N+YI+ YDN
Sbjct: 194 VKRSIPEKCWNEYITAYDN 212


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 275 FVSGNVTVKHNPLPERRNPPSN 210
           F  GNVTVK+ P+P+    P N
Sbjct: 674 FTPGNVTVKYYPVPKVIATPVN 695


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,014
Number of Sequences: 5004
Number of extensions: 49242
Number of successful extensions: 115
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)