Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0426
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0098 - 13459424-13459704,13459954-13460074                       33   0.17 
12_01_0287 - 2152179-2152424,2153300-2153339,2153612-2153831,215...    29   2.8  
05_04_0366 - 20663243-20663388,20663467-20663572,20664275-206643...    27   8.5  

>11_04_0098 - 13459424-13459704,13459954-13460074
          Length = 133

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -1

Query: 555 LGRRRA-CELNAPPRRRVNLTSWVWPHD---IVIKRYILIFAIPWT 430
           +GRRRA C   +PPRR    TSW   HD   + IK    +  +PWT
Sbjct: 19  IGRRRAECWAASPPRRS---TSWACGHDGEEVTIKELKPVEPLPWT 61


>12_01_0287 -
           2152179-2152424,2153300-2153339,2153612-2153831,
           2153917-2153995,2154087-2154155,2154237-2154329,
           2154411-2154477,2154579-2154640,2154729-2154774,
           2155359-2155404,2155490-2155547,2155717-2155755,
           2155849-2155920,2156067-2156158,2157036-2157135
          Length = 442

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 321 SFSNCIFFIHIFQSYLCIW 265
           + S CI  IH++Q++LC W
Sbjct: 330 AISFCIIHIHVYQNFLCNW 348


>05_04_0366 -
           20663243-20663388,20663467-20663572,20664275-20664367,
           20664520-20664657,20664759-20664886,20664996-20665156,
           20665277-20665367,20665460-20665516,20666288-20666444
          Length = 358

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 531 LNAPPRRRVNLTSWVWPHDIVIKRYILIFAIPWTTVAYVLLVKLV 397
           L+APP R++   + VW  D+  +   L++A      A+VL+   V
Sbjct: 134 LHAPPERQIESVAEVW--DLATEPAFLLYAAIVLAAAFVLIFHFV 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,423,876
Number of Sequences: 37544
Number of extensions: 292666
Number of successful extensions: 636
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)