Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0426
         (594 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46139| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.40 
SB_50518| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-32)                 30   1.2  
SB_24761| Best HMM Match : LRR_1 (HMM E-Value=0.0056)                  28   4.9  
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)                 27   8.6  

>SB_46139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 270 YKGTIGKYE*RKYNLRRTFEDKKEQC 347
           Y  TIG YE R  + RRT+E   EQC
Sbjct: 470 YSSTIGNYERRTSSNRRTYEGTTEQC 495


>SB_50518| Best HMM Match : 7tm_1 (HMM E-Value=7.8e-32)
          Length = 375

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
 Frame = -3

Query: 481 ARYCHKTIYTYFCN--TLDYCCVCPLSQTRQSLDVKALDLW----IFVMFSHCSFLSSNV 320
           A++ +KT+Y    +   + + CV PL    + +D + L+LW    +   ++   F+   V
Sbjct: 131 AKFSNKTVYLTIVSLWVIAFVCVIPLYIVLKVVDGQCLELWPSQSLNKAYTLALFVIEYV 190

Query: 319 LLKLYFLYSYFPIV 278
           +L    ++SY  IV
Sbjct: 191 ILMFVIIFSYTRIV 204


>SB_24761| Best HMM Match : LRR_1 (HMM E-Value=0.0056)
          Length = 298

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 516 RRRVNLTSWVWPHDIVIKRYILIFAIPWT 430
           R R+  +S+ WP D+    ++L+ A+PWT
Sbjct: 127 RSRLRASSY-WPRDVGNLSHLLLKAVPWT 154


>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
          Length = 1258

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 27/113 (23%), Positives = 45/113 (39%)
 Frame = -1

Query: 465  KRYILIFAIPWTTVAYVLLVKLVSR*MSKHWIFGFL*CFHIVLFYLQMSFSNCIFFIHIF 286
            K Y +   I W    ++ + K++      H I       + +L  +++SF   +  I +F
Sbjct: 779  KTYFIGIVIIWKAAVFIDIAKILQLAKDIHGIE------YRILLAIKISFGLFLLVI-VF 831

Query: 285  QSYLCIWKCYSETQPTPGTA*STIKLNFLAFSFFQQHFLQKL*IKVTHGITAL 127
              YL IW      +P P    +    N L  + F   F+  L   +  GIT L
Sbjct: 832  SCYLAIWIKVKLAKPLPNQRPANNNNNRLTSTLFTVTFV-SLICFIPIGITRL 883


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,002,426
Number of Sequences: 59808
Number of extensions: 369443
Number of successful extensions: 839
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)