Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0426
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28730-1|AAA68261.1|  113|Caenorhabditis elegans Hypothetical pr...    31   0.82 
AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical ...    29   2.5  
U28733-2|AAA68303.3|  381|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>U28730-1|AAA68261.1|  113|Caenorhabditis elegans Hypothetical
           protein K10B2.4 protein.
          Length = 113

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
 Frame = -3

Query: 544 SSLRTKRAASETG*P---NIMGMAARYCHKTIYTYFCNTLDYCCVC-PLSQTRQSLDVKA 377
           S+   ++A SE   P   N++GM    C   I   +C+ L   C C   + TR S D K 
Sbjct: 21  STANQQQAISEDPLPEYMNVLGMIFSMCGLMIRMKWCSWLALVCSCISFANTRTSDDAKQ 80

Query: 376 LDLWIFVMFSHCSFLSSNVLLKLYFLYSYFPIVPLYLEMLQ 254
           +           SF+ S   + + +L +  PI+P ++ +LQ
Sbjct: 81  I---------VSSFMLSVSAVVMSYLQNPSPIIPPWVTLLQ 112


>AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical
           protein Y32F6A.3 protein.
          Length = 655

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 7/33 (21%)
 Frame = -1

Query: 543 RACEL--NAPPRRRVN-----LTSWVWPHDIVI 466
           RAC+L  NA P R V+      ++W WPH +V+
Sbjct: 246 RACQLYPNASPSRLVHRMFFIFSTWTWPHPVVL 278


>U28733-2|AAA68303.3|  381|Caenorhabditis elegans Hypothetical
           protein C54A12.2 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -3

Query: 406 QTRQSLDVKALDLWIFVMFSHCSFLSSNVLLKLYFLYSYFPIVPLYLEML 257
           Q  Q+  V  L + IF  F  C F S  + L   F+  +  I  +YLEML
Sbjct: 299 QKEQNTTVMLLVITIF--FGFCHFFSMALKLAESFVGKFLTIQNIYLEML 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,527,863
Number of Sequences: 27780
Number of extensions: 276061
Number of successful extensions: 838
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)