Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0426
         (594 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63050.1 68418.m07910 expressed protein                             33   0.19 
At1g79410.1 68414.m09254 transporter-related low similarity to o...    29   1.8  
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu...    29   3.1  

>At5g63050.1 68418.m07910 expressed protein
          Length = 345

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = -1

Query: 495 SWVWPHDIVIKRYILIFAIPWTTVAYVLLVKLVSR*MSKHWIFGFL*CFHIVLFYLQMSF 316
           SW W  D  IK  +L+F +P     Y +    V++ +S  W+ G L    I+  Y++M  
Sbjct: 192 SWFWSLDAAIKIPLLLF-VPAFLAVYAICGAEVTKELSPMWVVGPL----IIALYIKMFQ 246

Query: 315 SNCIFFIHIF 286
             C  +   F
Sbjct: 247 GLCSLYAFCF 256


>At1g79410.1 68414.m09254 transporter-related low similarity to
           organic anion transporter 3 [Rattus norvegicus]
           GI:5545293; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 515

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -1

Query: 369 FGFL*CFHIVLFYLQMSFSNCIFFIHIFQSYLCIWKCYSETQPTPGT 229
           FGF     IVL  L ++F +   FI +F      W C   T   P T
Sbjct: 36  FGFSQFLQIVLVGLALTFDSQQIFITVFTDAYPTWHCLDHTICNPAT 82


>At1g07350.1 68414.m00783 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 382

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 461 RFMTISCGHTHDVRLTRLRGGAFSSQARRRPNSYSFSLTCR 583
           RF + S   + D R  R R  ++S   RRR  S S+S  CR
Sbjct: 224 RFYSPSRSPSPDDRYNRRRDRSYSPYYRRRDRSRSYSRNCR 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,601,733
Number of Sequences: 28952
Number of extensions: 248928
Number of successful extensions: 574
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)