Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0424
(678 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041) 84 1e-16
SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09) 31 1.1
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 30 1.5
SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31) 29 2.6
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84) 29 3.5
SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31) 29 3.5
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_4321| Best HMM Match : Ank (HMM E-Value=0) 28 6.0
SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012) 28 6.0
SB_50109| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-10) 28 8.0
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05) 28 8.0
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31) 28 8.0
>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
Length = 50
Score = 83.8 bits (198), Expect = 1e-16
Identities = 40/50 (80%), Positives = 43/50 (86%)
Frame = +1
Query: 340 MRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQK 489
MRGAFGKPQGTVARV IGQ I+S+R+ D KA IEALRRAKFKFPGRQK
Sbjct: 1 MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQK 50
>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1278
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -1
Query: 498 YVDLLTSGELELGTAQSLDDLCLPPVTRAHGHDGLSNANT--CYSTLRLAKRTT 343
Y + ++G + T D+C+P + HGH +ANT CY + A +T
Sbjct: 68 YAESCSAGHYVVRTGNPFTDICIP--CQCHGHSDQCDANTGICYVRIYTADLST 119
>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
Length = 177
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 190 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLS 309
L I C Y KN +D +RM +HP H IRIN ++S
Sbjct: 115 LSYAHIFCGSYS-KNAAEDI--VRMSVHPLHPIRINGVVS 151
>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
Length = 1023
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/73 (28%), Positives = 26/73 (35%)
Frame = -3
Query: 391 QCEHVLQYPEACQTHHASQSGAYQLQRMITFY*CG*RGKGEVSCGYGTDPFRSSLRGTYC 212
+C V Q P AC + S GA + Y C K V CG G T C
Sbjct: 535 KCPDVTQAPVACTNGYYSGDGATECTLCPAGYSCADATKSPVPCGKGYYSTNGQTSCTEC 594
Query: 211 SRYVLPPKPLSSA 173
S P L ++
Sbjct: 595 SAGFYCPVELGTS 607
>SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)
Length = 718
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 2 GAGQRDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTF 136
G G T N++ +G V LIP+ +I VR +P T+F
Sbjct: 313 GNGTACYTVEGSFNQLAGKGYVEAALIPKGARNIRVREVKPCTSF 357
>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 193 PKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQ 77
PK SS V+ RT AR ++R++ Y ++YG W Q
Sbjct: 295 PKFFSSIVYYGRT--ARFDYGKRRNMKRYGKKKYGKWRQ 331
>SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)
Length = 650
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 221 YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 90
Y+++QI+ ASK L + T C + K S V F+ K K R
Sbjct: 252 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 294
>SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
Length = 1273
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 221 YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 90
Y+++QI+ ASK L + T C + K S V F+ K K R
Sbjct: 1020 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 1062
>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2077
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/55 (21%), Positives = 26/55 (47%)
Frame = +1
Query: 346 GAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKW 510
G G+P G+V + +++++ +W + E++ A + FP S+ W
Sbjct: 1109 GVDGRPSGSVEILGSRDSFVAIQNGRQWMLDIEESISIAFYVFPNNSLGNTSRNW 1163
>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
Length = 915
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +1
Query: 25 RYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 204
R CK K ++R C+G + R+ K D+ +C SDE E + R
Sbjct: 444 RMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKDEGTDETR 499
Query: 205 IC 210
+C
Sbjct: 500 MC 501
>SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012)
Length = 450
Score = 28.3 bits (60), Expect = 6.0
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Frame = -3
Query: 280 GKGEVSCGYGTDPFRS-SLRGTYCSRYVLPPK----PLSSAVHIRRTPSARTVES----- 131
G + GY P+ + S R Y + LPP+ P SS + ++ P + E+
Sbjct: 359 GNYSATPGYERVPYANGSERNGYYNGTYLPPQGVITPRSSPLTVQEDPMNGSRENGLSNG 418
Query: 130 -----RQRSLSSYPNRRYGSWDQVHPDR 62
RQ SY +RRYG ++ +PD+
Sbjct: 419 HSDSRRQPMRLSYDSRRYGGYEAYYPDQ 446
>SB_50109| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-10)
Length = 315
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = -1
Query: 678 E*NVLIRLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLKLITFILC 517
E +V +RL++E + L++P + + R VLH + +S+ L LIT ++C
Sbjct: 97 ESDVSMRLFLEVI-LSVPFLISNDLHRLVLHQQSALSQKVLI-----LITTVVC 144
>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
Length = 726
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 348 CVWQASGYCSTCSHWTAHHV 407
C W +G C C HW HV
Sbjct: 79 CYWIRTGCCHLCWHWRPLHV 98
>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
Length = 883
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +2
Query: 377 HVFALDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMS 538
HV A P P + + + +S A+ +SS+P + S Q + + + N S
Sbjct: 261 HVIANQHPPAPVSQLQSNSNNASAARAITTSSNPSISTSVLQGNLSTNARNTAS 314
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,899,106
Number of Sequences: 59808
Number of extensions: 555981
Number of successful extensions: 1864
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1863
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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