Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0423
(359 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19245| Best HMM Match : ADK (HMM E-Value=0) 93 5e-20
SB_33375| Best HMM Match : ADK (HMM E-Value=1.6e-30) 71 4e-13
SB_13785| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 7e-05
SB_58530| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.004
SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11) 34 0.040
SB_20945| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.053
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.49
SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05) 29 0.86
SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 28 2.0
SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_20222| Best HMM Match : SSF (HMM E-Value=0.0045) 28 2.6
SB_25234| Best HMM Match : SMC_hinge (HMM E-Value=3.7e-28) 27 3.5
SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061) 27 4.6
SB_213| Best HMM Match : rve (HMM E-Value=2.2e-08) 27 6.1
SB_7447| Best HMM Match : CHGN (HMM E-Value=0) 26 8.0
SB_29651| Best HMM Match : DUF651 (HMM E-Value=0.055) 26 8.0
SB_21820| Best HMM Match : DUF622 (HMM E-Value=2.7) 26 8.0
>SB_19245| Best HMM Match : ADK (HMM E-Value=0)
Length = 188
Score = 93.5 bits (222), Expect = 5e-20
Identities = 40/87 (45%), Positives = 63/87 (72%)
Frame = +1
Query: 28 LKALILGAPASGKGTISSRIVKKYNIEHVSSGDKLRDHIAKQTELGKEVKAYLDEGKLVP 207
++A+I+G P SGKGT+S RIV+ + +EH+SSG+ LR H+ T+LG+E +AY+ +G+LVP
Sbjct: 32 VRAIIMGPPGSGKGTVSERIVRDFGVEHLSSGELLRHHVQNHTDLGEEAQAYILKGELVP 91
Query: 208 DDLMIKFMIKELKEVNNKPWLLEWISR 288
D+LM+ ++ EL + WLL+ R
Sbjct: 92 DELMVDLILHEL-DAKKGNWLLDGFPR 117
>SB_33375| Best HMM Match : ADK (HMM E-Value=1.6e-30)
Length = 297
Score = 70.5 bits (165), Expect = 4e-13
Identities = 34/89 (38%), Positives = 54/89 (60%)
Frame = +1
Query: 7 EFGTRKLLKALILGAPASGKGTISSRIVKKYNIEHVSSGDKLRDHIAKQTELGKEVKAYL 186
EF ++++ ILG P +GKGTI +VKKYN H+S+GD LR+ + + E G+ + +
Sbjct: 112 EFSGQRIV--YILGGPGAGKGTICDSVVKKYNYCHLSAGDLLREEVTRGNERGQMITEMM 169
Query: 187 DEGKLVPDDLMIKFMIKELKEVNNKPWLL 273
EGKLVP ++ I + ++E + P L
Sbjct: 170 REGKLVPKEITIGLLQDAMREHKDMPGFL 198
Score = 35.5 bits (78), Expect = 0.013
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 46 GAPASGKGTISSRIVKKYNIEHVSSGDKLRDHIAKQTELGKEVKAYLDEGKLVPD 210
G PA+GK T + +++N H+ G + K T+ K++ + G VP+
Sbjct: 243 GGPATGKKTHCKHVAERFNYTHIMPGTLVAQEAQKDTDRAKQLIQTISAGNDVPN 297
>SB_13785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 43.2 bits (97), Expect = 7e-05
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = +1
Query: 40 ILGAPASGKGTISSRIVKKYNIEHVSSGDKLRDHIAKQTELGKEVKAYLDEGKLVPDDLM 219
I+G P SGK ++ R+ + H+S G L++ K T+ G+EV + G LV +
Sbjct: 139 IVGGPGSGKAELAKRLAESSGRTHLSMGQLLKEEATKDTDRGREVAQAIAMGTLVSPEHA 198
Query: 220 IKFMIKEL 243
+ + +++
Sbjct: 199 LNILTEKI 206
Score = 32.3 bits (70), Expect = 0.12
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 40 ILGAPASGKGTISSRIVKKYNIEHVSSGDKLRDHIAKQTELGKE 171
I+G P SGK ++ + + H+S G L++ K T+ +E
Sbjct: 343 IVGGPGSGKTELAKLLAESSGRTHISMGQLLKEEATKDTDRARE 386
>SB_58530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 37.1 bits (82), Expect = 0.004
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +1
Query: 40 ILGAPASGKGTISSRIVKKYNIEHVSSGDKLRDHIAKQTELGKEVKAYLDEGKLV 204
++G P SGK ++ + + H+S G L++ K T+ +EV + G LV
Sbjct: 109 VIGGPGSGKTELAKLLAESSGRTHISMGQLLKEEATKDTDRAREVARAIGMGTLV 163
>SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11)
Length = 806
Score = 33.9 bits (74), Expect = 0.040
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Frame = +1
Query: 16 TRKLL--KALILGAPASGKGTISSRIVKKYNIEHVSSGDKLRDHIAK-QTELGKEVKAYL 186
TR LL +A ILG PASGK + ++ Y + H+ + + I K Q + +
Sbjct: 353 TRGLLPVRACILGPPASGKTLVVKQLCTHYKLHHIRIQSVIDEAIEKLQQSAARADQDND 412
Query: 187 DEGKL-VPDDLMIKFMIKELKEVNNKPWLLEWISREQ*NKL 306
DE + +D + + E KE NN + ++I R KL
Sbjct: 413 DEDDMKAQEDQELLEALLESKEQNNGRYEDQYIIRFYREKL 453
>SB_20945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 75
Score = 33.5 bits (73), Expect = 0.053
Identities = 12/53 (22%), Positives = 30/53 (56%)
Frame = +1
Query: 31 KALILGAPASGKGTISSRIVKKYNIEHVSSGDKLRDHIAKQTELGKEVKAYLD 189
+ ++LG GK + + KY + +VS + ++ +A +++G+ ++ Y+D
Sbjct: 18 RVVLLGPTGCGKSVQAELLASKYGLINVSCTELIKQSLADGSKIGESIQPYID 70
>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1670
Score = 30.3 bits (65), Expect = 0.49
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = -1
Query: 221 IIKSSGTSFPSSRYALTSLPSSVCFAMWSLSLSPL-DTCSILYFFTIRDDIVPFPDAGAP 45
I++S GT P+S+Y TS PS +P+ + S L F + DA P
Sbjct: 302 IVQSQGT--PTSKYIRTSTPSYDGKEPLQSQGTPIAEKFSCLQFSGTVGETSESSDAVQP 359
Query: 44 KINAFSSFLVPNS 6
AFSS ++P+S
Sbjct: 360 SPEAFSSHIIPSS 372
>SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05)
Length = 991
Score = 29.5 bits (63), Expect = 0.86
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 142 IAKQTELGKEVKAYLDEGKLVPDDLMIKFMIKEL 243
I QTELG + + L G+ +P++L+ K +I+++
Sbjct: 3 IEMQTELGVKAQEILLRGEAIPEELVTKLLIEKV 36
Score = 26.6 bits (56), Expect = 6.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 31 KALILGAPASGKGTISSRIVKKYN 102
K +LG P SGK ++ ++ ++YN
Sbjct: 321 KVCVLGPPHSGKTLVAKQLAERYN 344
>SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 22 KLLKALILGAPASGKGTISSRIV 90
KLLK I+G P SGK T+ +++V
Sbjct: 38 KLLKVAIIGEPNSGKSTLINQLV 60
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 106 EHVSSGDKLRDHIAKQTELGKEVKAYLDEGKLVPDDLMIKFMIKELKEVNNK 261
E+ + D+L +AK E G ++K D GK P++ + + + + E+ NK
Sbjct: 1766 EYAADNDRLERELAKSKEDGAKLKDLEDSGK-QPENDETRALQETINELENK 1816
>SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 751
Score = 27.9 bits (59), Expect = 2.6
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = +1
Query: 61 GKGTISSRIVKKYNIEHVSSGDKLRDHI-AKQTELGKEVKAY--LDEGKLVPDDLMIKFM 231
G G R V++ ++E ++S DK+++ + KQ + + DEG++ D I +
Sbjct: 18 GDGCFRGRAVQR-SLESLASEDKIQEKVYGKQKVYAPKQDQFSDYDEGEIKKMDSQIASL 76
Query: 232 IKELKEVNNK 261
++LKE+ +K
Sbjct: 77 QQKLKELQDK 86
>SB_20222| Best HMM Match : SSF (HMM E-Value=0.0045)
Length = 471
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3
Query: 153 LFCYVVPELISTRHMLNIVFFHYTRRYSSFSG 58
+F + + ++I + + ++FFH T Y SF+G
Sbjct: 334 MFSHNIYKMIFRQKLCCVIFFHDTNTYGSFTG 365
>SB_25234| Best HMM Match : SMC_hinge (HMM E-Value=3.7e-28)
Length = 552
Score = 27.5 bits (58), Expect = 3.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 6 GIRHEEATESIDFRRSSIRKRNYIVSYSEKIQ 101
G+RHEE+T + D ++ + I YS+ I+
Sbjct: 9 GVRHEESTRAGDLQKEVTQASENIEKYSQSIR 40
>SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061)
Length = 503
Score = 27.1 bits (57), Expect = 4.6
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 97 YNIEHVSSGDKLRDHIAKQTELGKEVKAYLDEGKLVPDD 213
+++EH +S D + + A+Q E G ++ +EG L+ D
Sbjct: 53 FDLEHSASQDFIPETHAEQLEAGSKLPESTNEGSLISFD 91
>SB_213| Best HMM Match : rve (HMM E-Value=2.2e-08)
Length = 745
Score = 26.6 bits (56), Expect = 6.1
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 189 VKVCFNLFAQFCLFCYVVPELISTRHMLNIVFFH 88
V VCF+ FC++C VV S RH IV H
Sbjct: 623 VLVCFS----FCIYCSVVVTHESRRHQRQIVTQH 652
>SB_7447| Best HMM Match : CHGN (HMM E-Value=0)
Length = 918
Score = 26.2 bits (55), Expect = 8.0
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = -3
Query: 210 IRYKFSFVKVCFNLFAQFCLFCYVVPELISTRHMLNIVFFHYTRRYSSFSGCW 52
+R+ +F VC NL A L PE ++ H + Y RY W
Sbjct: 489 VRFMKTFESVCLNLRADVKLLIVYFPE-VAESHQHKSLIKKYQTRYPEAELLW 540
>SB_29651| Best HMM Match : DUF651 (HMM E-Value=0.055)
Length = 289
Score = 26.2 bits (55), Expect = 8.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 157 ELGKEVKAYLDEGKLVPDDLMIKFMIKELKEVNNK 261
E+ + VKA +D+G+ +P LM K + +L + K
Sbjct: 42 EVCEPVKALVDQGEPIPPALMAKLLKFKLLHIKQK 76
>SB_21820| Best HMM Match : DUF622 (HMM E-Value=2.7)
Length = 472
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 187 DEGKLVPDDLMIKFMIKEL 243
D+ +LVP DL IK M+K L
Sbjct: 183 DDPRLVPKDLQIKKMVKRL 201
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,834,370
Number of Sequences: 59808
Number of extensions: 177297
Number of successful extensions: 542
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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