Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0423
         (359 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   3.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   5.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   5.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 95  FFTIRDDIVPFPDAGAPKINAFSSFLVPNS 6
           ++ IRD  V   DA   +I   S   VP+S
Sbjct: 589 YYKIRDSKVKTLDASHNRITELSPLSVPDS 618


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 1   LQEFGTRKLLKALILGAPASGKGTISS 81
           LQE  T     AL L  P + +GT+ S
Sbjct: 877 LQESSTDSRNPALALAEPYNQRGTVVS 903


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 1   LQEFGTRKLLKALILGAPASGKGTISS 81
           LQE  T     AL L  P + +GT+ S
Sbjct: 915 LQESSTDSRNPALALAEPYNQRGTVVS 941


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 239  SFIMNLIIKSSGTSFPSSRYALT 171
            SF+ NLI  S  T  P  + A+T
Sbjct: 1282 SFLDNLIRSSLETGIPRDQRAMT 1304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,257
Number of Sequences: 438
Number of extensions: 1681
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)