Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0422
(615 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 107 6e-26
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 1.8
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 23 1.8
AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective... 23 1.8
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 23 2.4
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 3.1
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 4.1
L10710-1|AAA27730.1| 382|Apis mellifera hyaluronidase protein. 22 5.5
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 7.2
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 21 7.2
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 107 bits (258), Expect = 6e-26
Identities = 58/171 (33%), Positives = 100/171 (58%), Gaps = 9/171 (5%)
Frame = +2
Query: 128 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 307
Q +E+F+ L+ +L I G++KP+ +Q+ A+ + GRD++A AQ+G+GKTA F++
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAV 252
Query: 308 SIL-----QQIDTSIR----ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 460
I+ + +D + E Q +I++PTREL QI + ++ + K GGT+
Sbjct: 253 PIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTS 312
Query: 461 VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRG 613
V +L +G H++V TPGR+ D + + + ++++ VLDEAD ML G
Sbjct: 313 VMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMG 363
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 23.4 bits (48), Expect = 1.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 273 SQELEKLLLSLYRFYNKSIQAFVNV 347
S++ E+L+ L+R YNK I+ N+
Sbjct: 24 SEDEERLVRDLFRGYNKLIRPVQNM 48
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 23.4 bits (48), Expect = 1.8
Identities = 16/65 (24%), Positives = 26/65 (40%)
Frame = -2
Query: 548 HDELSYHIHDLECPPPHEHHSPVGEYLHGHWCHQCKHGI*HSSDHQELSPPSEFVGPALL 369
++EL++ + CPPP S G G C + H +E PS+ +
Sbjct: 1689 YEELNHCAPNRRCPPPPRMGSAEGLSHRGMEDEICPYATFHLLGFREEMDPSKAMQFQTF 1748
Query: 368 WEPGS 354
PG+
Sbjct: 1749 PHPGN 1753
>AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective
protein-1 protein.
Length = 128
Score = 23.4 bits (48), Expect = 1.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 464 GHWCHQCKHGI*HSS 420
G CH+CK+GI SS
Sbjct: 40 GDSCHKCKYGIAMSS 54
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 23.0 bits (47), Expect = 2.4
Identities = 8/24 (33%), Positives = 11/24 (45%)
Frame = -2
Query: 554 EAHDELSYHIHDLECPPPHEHHSP 483
+ H L H H L+ +HH P
Sbjct: 139 QRHHHLQNHHHHLQSTAVQDHHRP 162
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.6 bits (46), Expect = 3.1
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Frame = +1
Query: 157 PQRRIVERHIRLWF*KTFC----NPATRNNAL 240
P +++ I WF TFC N AT NA+
Sbjct: 521 PDKQLTLNEIYNWFQNTFCYFRRNAATWKNAV 552
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 22.2 bits (45), Expect = 4.1
Identities = 6/8 (75%), Positives = 6/8 (75%)
Frame = +1
Query: 442 LHWWHQCP 465
LH WH CP
Sbjct: 470 LHHWHHCP 477
>L10710-1|AAA27730.1| 382|Apis mellifera hyaluronidase protein.
Length = 382
Score = 21.8 bits (44), Expect = 5.5
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 601 HFISFIKNKKFDGVGMKRTTSYHIIY-TTWSA 509
H I+ I +K F GVG+ S+ I+ W++
Sbjct: 126 HLINQIPDKSFPGVGVIDFESWRPIFRQNWAS 157
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.4 bits (43), Expect = 7.2
Identities = 10/30 (33%), Positives = 10/30 (33%)
Frame = -2
Query: 548 HDELSYHIHDLECPPPHEHHSPVGEYLHGH 459
H H H PH HHS H H
Sbjct: 415 HHHTMGHGHSHIHATPHHHHSHAATPHHQH 444
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 21.4 bits (43), Expect = 7.2
Identities = 7/18 (38%), Positives = 8/18 (44%)
Frame = -2
Query: 509 PPPHEHHSPVGEYLHGHW 456
PP H HH H H+
Sbjct: 349 PPHHHHHHQTQSLQHLHY 366
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,138
Number of Sequences: 438
Number of extensions: 4702
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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