Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0420
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   1.3  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    28   1.3  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    25   7.1  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    25   7.1  

>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 320

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +3

Query: 564 DFKIPHINHSIQVRDSSILKL 626
           + KIP I+HS++++D SIL L
Sbjct: 255 ELKIPAISHSLKLKDGSILVL 275


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 548 DIQSTLNNILNVQLKLSSLNLLIRKFFKIKH 456
           +I  ++NN+  V   LSSL L++ K+F++ H
Sbjct: 534 EISHSINNLEFVLYSLSSLFLMMLKWFRLSH 564


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 552 SRYTINAKQYFKRSTKTKFPKSPNTKIFQN 463
           S YT    QY   S  +  PK+PN K   +
Sbjct: 393 SHYTETISQYLPPSETSPIPKTPNFKFISS 422


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 623 LEDARIAYLYAV-VNVRDLEIV*AIVDIQSTLNNILNVQLKLSSLNLL 483
           LE   IAYL    V +RDL  V   +   ++ +N+LN+Q    S N L
Sbjct: 633 LEGNEIAYLTGCPVTIRDLNAVENRLSSLTSFSNLLNLQYLDISYNQL 680


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,219,934
Number of Sequences: 5004
Number of extensions: 39496
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)