Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0420
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39180| Best HMM Match : Herpes_LP (HMM E-Value=7.7)                 30   1.4  
SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_46961| Best HMM Match : DUF663 (HMM E-Value=0)                      27   9.9  

>SB_39180| Best HMM Match : Herpes_LP (HMM E-Value=7.7)
          Length = 268

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = +2

Query: 470 KIFVLGDLGNLVLVERLKYCLALIV 544
           K+FVLG LGNL L  R +Y L+L+V
Sbjct: 69  KVFVLGPLGNLSLPRR-RYSLSLVV 92


>SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 50  ILFSGISTLNNLVYCKVHALSLSHVCLSS 136
           I  +GI   +NLV C+V A  L + CL+S
Sbjct: 343 IFLAGIEATSNLVVCRVVAAFLHYFCLTS 371


>SB_46961| Best HMM Match : DUF663 (HMM E-Value=0)
          Length = 491

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 606 RVPVCCG*CAGS*NRLSYSRYTINAKQYFKRSTKTKFP 493
           R PV  G    + + L YS+  I   ++FKR  KT+ P
Sbjct: 36  RFPVILGGLLANEDTLGYSQVRIKKHRWFKRILKTRDP 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,097,503
Number of Sequences: 59808
Number of extensions: 251812
Number of successful extensions: 353
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)