Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0420
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    24   1.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   1.9  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    21   7.7  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 133 KRRNVLNTYSRVLTPLNQVNYGYIFNGYSHSQ*YVSFIIS 252
           K R ++++ S      N  NY Y +N Y+    Y ++II+
Sbjct: 310 KERKIISSLSNNYN-YNNNNYKYNYNNYNKKLYYKNYIIN 348


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 108 CRLVTFAFQASKRIKYLFKSAHAS*SGKLW 197
           C  V   F+  K  KYL+    A   G+LW
Sbjct: 425 CDFVVKLFKTFKDRKYLYMLMEACLGGELW 454


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 121 RLPFKRRNVLNTYSRVLTPL 180
           +LPF   NV++ Y R L PL
Sbjct: 25  QLPFCGPNVIDHYFRDLQPL 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,831
Number of Sequences: 438
Number of extensions: 2932
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)