Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0418
         (711 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RK33 Cluster: Drosophila melanogaster CG15040 gene pr...    35   2.3  
UniRef50_Q7PDN4 Cluster: ERYTHROCYTE MEMBRANE PROTEIN PFEMP3; n=...    33   6.9  

>UniRef50_Q7RK33 Cluster: Drosophila melanogaster CG15040 gene
           product; n=5; Plasmodium (Vinckeia)|Rep: Drosophila
           melanogaster CG15040 gene product - Plasmodium yoelii
           yoelii
          Length = 368

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -2

Query: 563 NLHYTFTDFFFLSINNSNCIIKNTLQIKTYVINCTKIRSMRNKNNIR 423
           N +Y +T  F +   + N +I N  + K   IN + I+ ++NKNNI+
Sbjct: 64  NTNYIYTQLFNIMAESCNVVINNYFE-KKQDINNSSIKEIKNKNNIK 109


>UniRef50_Q7PDN4 Cluster: ERYTHROCYTE MEMBRANE PROTEIN PFEMP3; n=5;
           Plasmodium (Vinckeia)|Rep: ERYTHROCYTE MEMBRANE PROTEIN
           PFEMP3 - Plasmodium yoelii yoelii
          Length = 833

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 25/83 (30%), Positives = 35/83 (42%)
 Frame = -2

Query: 677 YINRQ*KRSIKFYSYNRFMVHE*LYVVP*YKSKEILKTNLHYTFTDFFFLSINNSNCIIK 498
           Y N+  KR I     ++F  +E     P   +K+  K N        FF + NN NC I 
Sbjct: 62  YYNQNKKREIYKKEKSQFTDNEKNNYYPVRDNKQ-KKLNFKNIKNXIFFDNNNNENCQIT 120

Query: 497 NTLQIKTYVINCTKIRSMRNKNN 429
           N  ++    +N       RNKNN
Sbjct: 121 NNNKVNNSEVNNKHNHYSRNKNN 143


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 691,144,296
Number of Sequences: 1657284
Number of extensions: 13161038
Number of successful extensions: 24936
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24932
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57024798702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)