Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0418
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   3.5  
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    26   4.6  
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce...    26   6.1  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    25   8.1  
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    25   8.1  

>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 272  KIVNDSATYTLSTLSNLLPGRNIRDQRLTDYP 367
            +I+N  A   L+ +SN L GR+ + Q+  D P
Sbjct: 2279 EILNQRAITVLNRVSNKLTGRDFKPQQQLDVP 2310


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +2

Query: 263 KLWKIVNDSATYTLSTLSNLLPGRNIRDQRLTDYPIYYILKYV--ILNCQTPHSDV 424
           K+  I  D       T   +L    + D+ L D P Y++L  +  +L  Q+P  ++
Sbjct: 380 KMRAIAEDLDPEVYGTKRRILGMLALADEELPDVPFYFVLSQICSVLRSQSPPQNI 435


>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/24 (45%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = +2

Query: 260 NKLWKIVNDSATYTL-STLSNLLP 328
           NK++K VNDS T++  +T+S++ P
Sbjct: 7   NKIYKGVNDSTTFSFNATVSSITP 30


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 280 NDLPKFVLGRSRIFRPASQTRGWSRYHFIL*F 185
           ND  K  L +SRI   A    G+ RY + L F
Sbjct: 52  NDFSKTYLAKSRILSNAMNEIGFGRYQWYLFF 83


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 551 TFTDFFFLSINNSNCIIKNTLQIKTY-VINCTKIRSMRNKNNIR 423
           +F    F+ + +  C+++  L IKT+  I  +KI ++ N    R
Sbjct: 80  SFNSLRFIVLKSKTCLLRYKLLIKTFCCITYSKIENLSNTRMAR 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,813
Number of Sequences: 5004
Number of extensions: 60614
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)