Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0418
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1485 + 30462009-30462098,30462212-30462340,30462416-304625...    29   2.8  
06_03_1484 + 30452646-30452666,30453958-30454041,30454122-304542...    28   6.4  
02_04_0608 - 24308212-24308396,24308579-24308889,24308994-24309034     28   6.4  
07_01_0453 + 3420727-3420800,3421666-3421792,3422348-3422431,342...    28   8.4  

>06_03_1485 +
           30462009-30462098,30462212-30462340,30462416-30462520,
           30462626-30462706,30462885-30463000,30463083-30463184,
           30463298-30463417,30463678-30463748,30463805-30463899,
           30464001-30464075,30464130-30464219,30464687-30464794
          Length = 393

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 231 LLKLEDGHDIILFYSSVMTTQPFTLQWSLKSIESAA*K 118
           +LK  D  D++LF+    TT+   L+WS +++  +A K
Sbjct: 133 VLKFSDKFDVVLFHYDGRTTEWDDLEWSKQAVHVSAKK 170


>06_03_1484 +
           30452646-30452666,30453958-30454041,30454122-30454237,
           30454352-30454592,30454777-30454830,30454972-30455046,
           30455152-30455184,30456654-30456691,30457254-30457311
          Length = 239

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 225 KLEDGHDIILFYSSVMTTQPFTLQWSLKSIESAA*K 118
           KL D  DI+LF+    TT+    +WS K +  +A K
Sbjct: 35  KLSDKFDIVLFHYDGRTTEWEEFEWSKKVVHVSAKK 70


>02_04_0608 - 24308212-24308396,24308579-24308889,24308994-24309034
          Length = 178

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 287 SATYTLSTLSNLLPGRNIRDQRLTDY 364
           S T TL+ LSN+ PGR +R  +   Y
Sbjct: 6   SITTTLTILSNIFPGRRVRPVKALGY 31


>07_01_0453 +
           3420727-3420800,3421666-3421792,3422348-3422431,
           3422550-3422644,3423063-3423154,3423326-3423379,
           3424221-3424273,3424472-3424539,3424777-3424852,
           3425159-3425242,3425793-3425941,3426375-3426492,
           3426583-3426699,3426950-3427170,3427503-3427536,
           3427585-3427685,3427832-3427943,3428379-3428504,
           3428579-3428716,3428808-3428858,3428938-3429050,
           3430253-3430318,3430582-3430729,3430826-3430930,
           3431017-3431118,3431495-3431567,3431647-3431813,
           3431906-3432028
          Length = 956

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
 Frame = -1

Query: 273 FQSLFWEDRESSD-----PLLKLEDGHDIILFYSSVM 178
           F +L W D  S D     P   LE GHDI+ F+ + M
Sbjct: 491 FSTLGWPDLSSEDFKHFYPATVLETGHDILFFWVARM 527


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,711,324
Number of Sequences: 37544
Number of extensions: 324379
Number of successful extensions: 504
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)