Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0418
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23412-2|AAN65294.1|  678|Caenorhabditis elegans Glycyl trna syn...    29   3.3  
U23412-1|AAK21465.2|  742|Caenorhabditis elegans Glycyl trna syn...    29   3.3  
Z78539-8|CAE17715.1|  223|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z69661-7|CAE17832.1|  223|Caenorhabditis elegans Hypothetical pr...    28   5.7  

>U23412-2|AAN65294.1|  678|Caenorhabditis elegans Glycyl trna
           synthetase protein1, isoform b protein.
          Length = 678

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
 Frame = -2

Query: 575 ILKTNLHYT-FTDFFFLSINNSNC-----IIKNTLQIKTYVINCTKIRSMRNKNNIRHRY 414
           +LK + H   F D+    + N  C     +IKN+++ K      T     ++  ++  R 
Sbjct: 134 VLKASGHVDRFADWMVKDMKNGECFRADHLIKNSIE-KLLNDKKTSAAVKQDGQDVLARL 192

Query: 413 EGFDNLK*HT*VYNILDSQLVVGREYCDPVA 321
           EGFDN   H  +        + G +  +P+A
Sbjct: 193 EGFDNKDMHEVITRFNFKSPITGNDLTEPIA 223


>U23412-1|AAK21465.2|  742|Caenorhabditis elegans Glycyl trna
           synthetase protein1, isoform a protein.
          Length = 742

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
 Frame = -2

Query: 575 ILKTNLHYT-FTDFFFLSINNSNC-----IIKNTLQIKTYVINCTKIRSMRNKNNIRHRY 414
           +LK + H   F D+    + N  C     +IKN+++ K      T     ++  ++  R 
Sbjct: 198 VLKASGHVDRFADWMVKDMKNGECFRADHLIKNSIE-KLLNDKKTSAAVKQDGQDVLARL 256

Query: 413 EGFDNLK*HT*VYNILDSQLVVGREYCDPVA 321
           EGFDN   H  +        + G +  +P+A
Sbjct: 257 EGFDNKDMHEVITRFNFKSPITGNDLTEPIA 287


>Z78539-8|CAE17715.1|  223|Caenorhabditis elegans Hypothetical
           protein F48F7.8 protein.
          Length = 223

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 561 FTLYIYRFFFSFNK*FKLYY*EHITNKNLCNKL 463
           FTL++YR F+S    F  +  E +    +CNK+
Sbjct: 182 FTLWLYRIFYSLASHFFEFGFEILKEHKICNKM 214


>Z69661-7|CAE17832.1|  223|Caenorhabditis elegans Hypothetical
           protein F48F7.8 protein.
          Length = 223

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 561 FTLYIYRFFFSFNK*FKLYY*EHITNKNLCNKL 463
           FTL++YR F+S    F  +  E +    +CNK+
Sbjct: 182 FTLWLYRIFYSLASHFFEFGFEILKEHKICNKM 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,171,984
Number of Sequences: 27780
Number of extensions: 323389
Number of successful extensions: 641
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)