Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0416
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 206 3e-54
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 206 3e-54
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 144 7e-36
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 97 3e-21
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 44 3e-05
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 25 7.2
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 25 7.2
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 25 9.5
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 25 9.5
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 25 9.5
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 9.5
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 206 bits (502), Expect = 3e-54
Identities = 96/150 (64%), Positives = 111/150 (74%), Gaps = 1/150 (0%)
Frame = +2
Query: 2 CR-NRHEGTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGI 178
CR N + LH DAIHRGGGQIIPT RR +YA L A P + EPV+L EIQ E A+GGI
Sbjct: 684 CRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGI 743
Query: 179 YGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQV 358
Y VLN++RGHVF E Q GTP++ +KAYLPVNESFGFT +LR T GQAFPQ VFDHW
Sbjct: 744 YSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSP 803
Query: 359 LPGDPCEPQSKPYNVVQETRKRKGLKEGLP 448
+ GDP +P SKP +V E RKRKGLKE +P
Sbjct: 804 MSGDPLDPTSKPGQIVCEARKRKGLKENVP 833
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 206 bits (502), Expect = 3e-54
Identities = 96/150 (64%), Positives = 111/150 (74%), Gaps = 1/150 (0%)
Frame = +2
Query: 2 CR-NRHEGTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGI 178
CR N + LH DAIHRGGGQIIPT RR +YA L A P + EPV+L EIQ E A+GGI
Sbjct: 684 CRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGI 743
Query: 179 YGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQV 358
Y VLN++RGHVF E Q GTP++ +KAYLPVNESFGFT +LR T GQAFPQ VFDHW
Sbjct: 744 YSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSP 803
Query: 359 LPGDPCEPQSKPYNVVQETRKRKGLKEGLP 448
+ GDP +P SKP +V E RKRKGLKE +P
Sbjct: 804 MSGDPLDPTSKPGQIVCEARKRKGLKENVP 833
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 144 bits (350), Expect = 7e-36
Identities = 66/123 (53%), Positives = 86/123 (69%)
Frame = +2
Query: 26 LHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRG 205
L + I+RGGGQIIPT RR Y+ LTA PRLMEPVY+ E+ P ++ IY +L RRRG
Sbjct: 809 LAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRG 868
Query: 206 HVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQ 385
HV ++ G+P+++V+A +PV +S GF DLR +T GQA Q VFDHWQV+PGDP +
Sbjct: 869 HVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKS 928
Query: 386 SKP 394
KP
Sbjct: 929 IKP 931
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 96.7 bits (230), Expect = 3e-21
Identities = 43/106 (40%), Positives = 64/106 (60%)
Frame = +2
Query: 56 GQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAG 235
GQ+I + + L PRLM +Y C++Q +G +YGV+++RRG V +E G
Sbjct: 841 GQVISVVKESIRHGFLGWSPRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEG 900
Query: 236 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 373
TP FIVKA +PV ESFGF ++ T G A+PQ +F +++L +P
Sbjct: 901 TPFFIVKALIPVVESFGFAVEILKRTSGAAYPQLIFHGFEMLDENP 946
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 43.6 bits (98), Expect = 3e-05
Identities = 21/74 (28%), Positives = 40/74 (54%)
Frame = +2
Query: 101 LTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNES 280
L A P ++EP+ I P GG+ G L++R+ + + F ++A +P+N
Sbjct: 668 LQANPMVLEPIMNVSITAPVEHQGGVIGNLDKRKATIVDSD--TDEDEFTLQAEVPLNSM 725
Query: 281 FGFTADLRSNTGGQ 322
F +++D+R+ T G+
Sbjct: 726 FSYSSDIRALTKGK 739
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 347 HWQVLPGDPCEPQSKPYNVVQETRKRK 427
H+Q L GDP + PY VQ RK
Sbjct: 78 HFQNLSGDPVSQMATPYPPVQIELMRK 104
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 65 IPTTRRCLYACLLTAQPRLMEPVYL-CEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTP 241
IP T RC+ + + + P+L P L + CP + + V+ H F + P
Sbjct: 386 IPNTERCILSAFICSPPQLPLPNPLRMYLPCPSLNSTEV-SVITLAPQHSFLNIVINLNP 444
Query: 242 MFIVKAY 262
+K+Y
Sbjct: 445 ALALKSY 451
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 48 EVVAKSFQQLEDACTHVC*LLSPVLWSLY 134
+V A+ F+ + D CT +SP++W +Y
Sbjct: 665 DVYAELFEII-DGCTFASKEISPIMWGVY 692
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = -2
Query: 591 SHLRVCFNMMRNM---CC*K*TCVKRFPYRYVFLICFNYVV 478
SH +C N + + C TC+ R YRY F+ + V+
Sbjct: 196 SHCHLCDNCVEYLDHHCIWLNTCIGRRNYRYYFIFLLSVVL 236
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 288 LLPICVPTPADRPSRSAYSTIGRS 359
+LP+ + TPA P + YS G S
Sbjct: 109 VLPLSINTPAQWPEKEVYSLQGTS 132
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = +1
Query: 292 CRFAFQHRRTGL----PAVR-IRPLAGPPWRPVRTSEQALQRCTGNEKEERIEGR 441
CRF + H + L PA R + WRPV E + NE+++R + R
Sbjct: 42 CRFCWHHIKEDLNGRCPACRRLYTEENVQWRPVTAEEWKMDLHRKNERKKREKER 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,270
Number of Sequences: 5004
Number of extensions: 57598
Number of successful extensions: 126
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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