Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0416
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0017 + 18937774-18937864,18938505-18940945 209 2e-54
04_01_0103 + 1082077-1082167,1083037-1085477 206 9e-54
01_06_0662 + 30987187-30987277,30987825-30990214 185 2e-47
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 181 5e-46
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 151 6e-37
03_05_0511 + 25056018-25059107 98 5e-21
02_04_0148 - 20198407-20201424 95 4e-20
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 52 3e-07
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 48 5e-06
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400... 38 0.009
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 37 0.016
01_04_0109 + 16112581-16112934 32 0.34
09_06_0142 - 21107878-21109104 28 5.6
11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195 27 9.8
04_01_0330 - 4369326-4370852 27 9.8
03_05_1048 - 29950860-29951396,29951810-29952676 27 9.8
01_06_0456 + 29521282-29522064 27 9.8
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 209 bits (510), Expect = 2e-54
Identities = 94/138 (68%), Positives = 112/138 (81%)
Frame = +2
Query: 26 LHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRG 205
LH DAIHRGGGQ+IPT RR +YA LTA+PRL+EPVYL EIQ PE A+GGIYGVLN++RG
Sbjct: 694 LHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPENALGGIYGVLNQKRG 753
Query: 206 HVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQ 385
HVFEE Q GTP++ +KAYLPV ESFGF++ LR+ T GQAFPQCVFDHW ++ DP E
Sbjct: 754 HVFEEMQRPGTPLYNIKAYLPVIESFGFSSQLRAATSGQAFPQCVFDHWDMMTSDPLEAG 813
Query: 386 SKPYNVVQETRKRKGLKE 439
S+ +VQ+ RKRKGLKE
Sbjct: 814 SQASTLVQDIRKRKGLKE 831
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 206 bits (504), Expect = 9e-54
Identities = 93/138 (67%), Positives = 111/138 (80%)
Frame = +2
Query: 26 LHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRG 205
LH DAIHRGGGQ+IPT RR +YA LTA+PRL+EPVYL EIQ PE A+GGIYGVLN++RG
Sbjct: 694 LHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPENALGGIYGVLNQKRG 753
Query: 206 HVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQ 385
HVFEE Q GTP++ +KAYLPV ESFGF++ LR+ T GQAFPQCVFDHW ++ DP E
Sbjct: 754 HVFEEMQRPGTPLYNIKAYLPVIESFGFSSQLRAATSGQAFPQCVFDHWDMMTSDPLEVS 813
Query: 386 SKPYNVVQETRKRKGLKE 439
S+ +V + RKRKGLKE
Sbjct: 814 SQANQLVLDIRKRKGLKE 831
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 185 bits (451), Expect = 2e-47
Identities = 84/122 (68%), Positives = 100/122 (81%)
Frame = +2
Query: 26 LHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRG 205
LH+DAIHRGGGQIIPT RR +YA LTA+PRL+EPVYL EIQ PE A+GGIY VLN++RG
Sbjct: 692 LHSDAIHRGGGQIIPTARRVIYAAQLTAKPRLLEPVYLVEIQAPENALGGIYSVLNQKRG 751
Query: 206 HVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQ 385
HVFEE Q GTP++ +KAYLPV ESFGFT+ LR+ T GQAFP VFDHW++L DP EP
Sbjct: 752 HVFEEMQRPGTPLYNIKAYLPVIESFGFTSTLRAATSGQAFPLFVFDHWEMLSVDPLEPG 811
Query: 386 SK 391
++
Sbjct: 812 TR 813
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 181 bits (440), Expect = 5e-46
Identities = 80/139 (57%), Positives = 102/139 (73%)
Frame = +2
Query: 23 TLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRR 202
TLH+D+IHRGGGQ+IPT RR +YA LTA PRLMEP+Y +IQ P+ AVG +YGVLN R
Sbjct: 703 TLHSDSIHRGGGQLIPTARRAMYAAQLTASPRLMEPMYQVDIQVPKTAVGNVYGVLNSRN 762
Query: 203 GHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEP 382
G + EES+ GTP+ ++ YLPV +SF FT LR+ T GQAFPQC+F HWQ + DP +
Sbjct: 763 GELVEESERTGTPLSNLRFYLPVAKSFDFTEKLRAETSGQAFPQCIFHHWQTMRSDPFQE 822
Query: 383 QSKPYNVVQETRKRKGLKE 439
S+ V+ + RKRKGLK+
Sbjct: 823 GSEAAKVITDIRKRKGLKD 841
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 151 bits (365), Expect = 6e-37
Identities = 78/147 (53%), Positives = 95/147 (64%), Gaps = 12/147 (8%)
Frame = +2
Query: 35 DAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVF 214
+ +HRGGGQIIPT RR +Y+ L A PRLMEPVY EIQ P V IY VL+RRRGHV
Sbjct: 823 EPLHRGGGQIIPTARRVVYSAFLMANPRLMEPVYYIEIQTPIDCVSAIYTVLSRRRGHVT 882
Query: 215 EESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGD-------- 370
+ GTP+++VKA+LPV ESFGF DLR +T GQAF VFDHW ++PGD
Sbjct: 883 ADVPKPGTPIYVVKAFLPVIESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKNIVL 942
Query: 371 -PCEP---QSKPYNVVQETRKRKGLKE 439
P EP Q + +TR+RKG+ E
Sbjct: 943 RPLEPAPIQHLAREFMVKTRRRKGMSE 969
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 98.3 bits (234), Expect = 5e-21
Identities = 45/115 (39%), Positives = 65/115 (56%)
Frame = +2
Query: 29 HTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGH 208
H++ + GQ+I + ++ +PRL+E +Y CE+ P +G Y VL+R+R
Sbjct: 858 HSEQYNIFSGQVITAVKEACREAVVQNKPRLVEAMYFCELTTPTEQLGATYAVLSRKRAR 917
Query: 209 VFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 373
V +E GT +F V AYLPV ES GF+ +LRS T G A V HW+ +P DP
Sbjct: 918 VLKEEMQEGTSLFTVHAYLPVAESVGFSNELRSVTAGAASALLVLSHWEAIPEDP 972
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 95.1 bits (226), Expect = 4e-20
Identities = 45/106 (42%), Positives = 59/106 (55%)
Frame = +2
Query: 56 GQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAG 235
GQII R A +L ++PRL+EP+Y CE+ P +G +Y VL R V +E G
Sbjct: 843 GQIITAVREACQAAILESKPRLVEPMYFCELTTPTEQLGSMYAVLGNCRARVLKEEMQEG 902
Query: 236 TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 373
T +F V AYL V ES F+ LR+ T G A F HW+ +P DP
Sbjct: 903 TSLFTVHAYLSVAESSEFSKKLRNATAGAASALLAFSHWETVPQDP 948
>04_04_0640 -
26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 52.4 bits (120), Expect = 3e-07
Identities = 31/89 (34%), Positives = 46/89 (51%)
Frame = +2
Query: 98 LLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNE 277
L A PRL+EP+ E+ PE +G + G LN RRG V G + +V A++P+ E
Sbjct: 644 LRKAGPRLLEPIMKVEVITPEEHLGDVIGDLNSRRGQVNSFGDKPG-GLKVVDAFVPLAE 702
Query: 278 SFGFTADLRSNTGGQAFPQCVFDHWQVLP 364
F + + LR T G+A + V+P
Sbjct: 703 MFQYVSTLRGMTKGRASYTMQLAKFDVVP 731
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/76 (31%), Positives = 41/76 (53%)
Frame = +2
Query: 95 CLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVN 274
C A+P ++EPV E++ P G + G +N+R+G + Q +V ++P+N
Sbjct: 665 CYAAARPVILEPVMKVELKVPTEFQGTVTGDMNKRKGIIVGNDQEGDDT--VVVCHVPLN 722
Query: 275 ESFGFTADLRSNTGGQ 322
FG++ LRS T G+
Sbjct: 723 NMFGYSTALRSMTQGK 738
>02_02_0474 +
10738476-10738797,10739568-10739677,10739891-10740094,
10740400-10740576,10740659-10740811,10741535-10741624,
10741939-10742049,10742169-10742285,10742881-10743032,
10743116-10743200,10743597-10743691,10744211-10744376,
10744459-10744654,10745662-10745795
Length = 703
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/89 (22%), Positives = 38/89 (42%)
Frame = +2
Query: 104 TAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESF 283
T +L EP + ++ PE +G + +L +RRG + + ++K +P
Sbjct: 497 TVDGKLQEPYEIAAVEVPEEYMGSVVELLGKRRGQMVDMQPSGPEGTTLLKYKIPTRGLI 556
Query: 284 GFTADLRSNTGGQAFPQCVFDHWQVLPGD 370
G + + + G A +FD + GD
Sbjct: 557 GLRNAVLTASRGTAILNTIFDSYGPWAGD 585
>11_06_0768 +
27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 36.7 bits (81), Expect = 0.016
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +3
Query: 276 SRSVLLPICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGKD 431
S S +P +P P D PS+ +T G S+ +N SP+ +Y K G D
Sbjct: 19 STSARVPGVIPKPIDLPSQRGTATQGDKSMPPASNAWGSPSVMYPKNGGGSD 70
>01_04_0109 + 16112581-16112934
Length = 117
Score = 32.3 bits (70), Expect = 0.34
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +3
Query: 273 MSRSVLLP--ICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGK 428
M+ VL P + +P+PA R R+ +T R++ +++ R PTT +R +G+
Sbjct: 1 MATEVLRPHNVLLPSPAQRRIRATAATHQRTANNHQSDARTKPTTAGSRRRQGR 54
>09_06_0142 - 21107878-21109104
Length = 408
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 397 VGLALRFARVSREDLPMVEYALREGLS-AGVGTQIGSKTER 278
V L L++ E LP++ A REG++ AGV +GS R
Sbjct: 171 VDLGLKYGANPDEVLPLLRAAQREGVAVAGVSFHVGSGASR 211
>11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195
Length = 767
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +1
Query: 445 PRLNSIFGQIVNYIVKAN*KNVSIRKALHACLFSTTHVPHHIKA 576
PR + +++NYIV + K+ + S +PHH+K+
Sbjct: 389 PRTREEWERVLNYIVSTSEKDNDLEVMNKILFMSYNDLPHHMKS 432
>04_01_0330 - 4369326-4370852
Length = 508
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 72 VGMIWPPPLWMASVWSVPS 16
+G IWPPP+W S S
Sbjct: 487 IGKIWPPPVWFKRCTSATS 505
>03_05_1048 - 29950860-29951396,29951810-29952676
Length = 467
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 83 CLYACLLTAQPRLMEPVYLCEIQCPEVAVG 172
C C+LTA PR+M +L E ++ VG
Sbjct: 77 CGRRCVLTANPRMMVEAFLKEYLGADIVVG 106
>01_06_0456 + 29521282-29522064
Length = 260
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 401 RCRACSEVRTGLQGGPANGRIRTAGRPVRRCWNANR 294
R C +G +GG R R AG RRC A+R
Sbjct: 11 RAWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADR 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,483,688
Number of Sequences: 37544
Number of extensions: 415879
Number of successful extensions: 1118
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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