Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0416
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 251 3e-67
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 144 4e-35
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33) 112 2e-25
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15) 84 8e-17
SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029
SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13) 33 0.15
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09) 28 5.7
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0) 28 7.6
SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 251 bits (615), Expect = 3e-67
Identities = 118/147 (80%), Positives = 124/147 (84%)
Frame = +2
Query: 8 NRHEGTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGV 187
N H+ TLH DAIHRGGGQIIPT RR LYAC+LTA+P L+EPVY EIQCPE AVGGIYGV
Sbjct: 678 NIHDVTLHADAIHRGGGQIIPTARRVLYACMLTAKPCLLEPVYSVEIQCPESAVGGIYGV 737
Query: 188 LNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPG 367
LNRRRG V EES VAGTPMFIVKAYLPV ESFGFTADLRS TGGQAFPQCVFDHWQVLPG
Sbjct: 738 LNRRRGQVLEESNVAGTPMFIVKAYLPVMESFGFTADLRSKTGGQAFPQCVFDHWQVLPG 797
Query: 368 DPCEPQSKPYNVVQETRKRKGLKEGLP 448
D + S P VV TRKRKGLKEG+P
Sbjct: 798 DVHDLASMPGQVVANTRKRKGLKEGIP 824
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 144 bits (350), Expect = 4e-35
Identities = 62/115 (53%), Positives = 82/115 (71%)
Frame = +2
Query: 35 DAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVF 214
+ IHRGGGQIIPT RR Y+ L A PRLMEP + E+Q P V +Y VL RRRGHV
Sbjct: 667 EPIHRGGGQIIPTARRVAYSAFLMATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVT 726
Query: 215 EESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCE 379
+++ V G+P++ +KA++P +SFGF DLR++T GQAF VF HWQ++PGDP +
Sbjct: 727 QDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLD 781
>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
Length = 119
Score = 112 bits (270), Expect = 2e-25
Identities = 47/91 (51%), Positives = 65/91 (71%)
Frame = +2
Query: 107 AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 286
A PRLMEP + E+Q P V +Y VL RRRGHV +++ V G+P++ +KA++P +SFG
Sbjct: 1 ATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFG 60
Query: 287 FTADLRSNTGGQAFPQCVFDHWQVLPGDPCE 379
F DLR++T GQAF VF HWQ++PGDP +
Sbjct: 61 FETDLRTHTQGQAFCLSVFHHWQIVPGDPLD 91
>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
Length = 549
Score = 84.2 bits (199), Expect = 8e-17
Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Frame = +2
Query: 110 QP-RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 286
QP RLM +Y C IQ +G +Y V+ RR G V E G+ +F V+A LPV ESFG
Sbjct: 407 QPMRLMAAMYTCHIQATAEVLGRMYAVIARREGRVLSEEMKEGSDVFDVEAVLPVAESFG 466
Query: 287 FTADLRSNTGGQAFPQCVFDHWQVLPGDP 373
F+ ++R T G A PQ +F HW+ + DP
Sbjct: 467 FSEEIRKRTSGLANPQLMFSHWEAIDLDP 495
>SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 35.9 bits (79), Expect = 0.029
Identities = 23/60 (38%), Positives = 30/60 (50%)
Frame = +3
Query: 267 LSMSRSVLLPICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGKD*RKVS 446
+S + L P+ VPTPA R S + RS +TRAN+R SP +RG K S
Sbjct: 157 ISSTPQTLSPVSVPTPATR------SVLKRSPGKTRANIRGSPRYHDHSHQRGSPKTKTS 210
>SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)
Length = 238
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 170 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 322
G + +NRR G V G F + A +P+N+ FG+ +LRS T G+
Sbjct: 155 GTVIAGVNRRHGQVTGTDANEG--YFTLFAEVPLNDMFGYATELRSQTQGK 203
>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1117
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 41 IHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYL 139
+ R +I+PT RR + LLT+ +PVY+
Sbjct: 538 VRRSLQEIVPTQRRKAFVALLTSTVNAKQPVYI 570
>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 303 VPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGKD*RKVSQ 449
+PT ++ SRS+ G S TR R + R R+RGK+ +S+
Sbjct: 440 LPTEKEKTSRSSSELSGDSQGSTRPRCRPAEPEGTRDRKRGKESESLSK 488
>SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)
Length = 283
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = -2
Query: 351 QWSNTHCGKACPPVLE--RKSAVKPNDSL 271
Q+ +CG ACPP E KS VK N L
Sbjct: 159 QYDRVYCGAACPPDFEDYMKSLVKVNGIL 187
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 213 SKSPRWQVHLCSL*RPTYLSMSRSVLLPICVPTPADRPSRSAYSTIGRSSL 365
+K P + L SL P + S S L P+P +PS S I +S++
Sbjct: 3074 NKPPEYSTVLASLSTPKEVHQSASEPLKRVSPSPGGKPSDKVSSVISQSTI 3124
>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2123
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 87 KHLLVVGMIWPPPLWMASVWSVPS 16
K ++V G++ P LWM + WS PS
Sbjct: 425 KRVMVGGILVQPYLWMQAPWSKPS 448
>SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)
Length = 808
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +2
Query: 356 VLPGDPCEPQS-KPYNVVQETRK 421
+LP PCEP S KPY E R+
Sbjct: 65 ILPASPCEPDSPKPYTPESEGRE 87
>SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 108 AVSRHAYKHLLVVGMIWPPPLWMA 37
A+ +H HL + +WP WMA
Sbjct: 13 ALRKHQCSHLFTIKRVWPVTRWMA 36
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,262,519
Number of Sequences: 59808
Number of extensions: 472851
Number of successful extensions: 1209
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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