Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0416
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 270 4e-73
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 270 4e-73
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 143 8e-35
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 143 8e-35
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 71 9e-13
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 35 0.044
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 30 1.2
AF068713-7|AAC17798.2| 359|Caenorhabditis elegans Hypothetical ... 30 1.6
AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical ... 29 3.8
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr... 28 5.0
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical protein
F25H5.4 protein.
Length = 852
Score = 270 bits (663), Expect = 4e-73
Identities = 122/147 (82%), Positives = 131/147 (89%)
Frame = +2
Query: 8 NRHEGTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGV 187
N H+ TLH DAIHRGGGQIIPT RR YA +LTA+PRL+EPVYL EIQCPE AVGGIYGV
Sbjct: 697 NVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGV 756
Query: 188 LNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPG 367
LNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPG
Sbjct: 757 LNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPG 816
Query: 368 DPCEPQSKPYNVVQETRKRKGLKEGLP 448
DP E +KP +V +TRKRKGLKEG+P
Sbjct: 817 DPLEAGTKPNQIVLDTRKRKGLKEGVP 843
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 270 bits (663), Expect = 4e-73
Identities = 122/147 (82%), Positives = 131/147 (89%)
Frame = +2
Query: 8 NRHEGTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGV 187
N H+ TLH DAIHRGGGQIIPT RR YA +LTA+PRL+EPVYL EIQCPE AVGGIYGV
Sbjct: 697 NVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGV 756
Query: 188 LNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPG 367
LNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPG
Sbjct: 757 LNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPG 816
Query: 368 DPCEPQSKPYNVVQETRKRKGLKEGLP 448
DP E +KP +V +TRKRKGLKEG+P
Sbjct: 817 DPLEAGTKPNQIVLDTRKRKGLKEGVP 843
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 143 bits (347), Expect = 8e-35
Identities = 69/153 (45%), Positives = 95/153 (62%), Gaps = 12/153 (7%)
Frame = +2
Query: 17 EGTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNR 196
+ + T+ ++RGGGQ+IPT RRC Y+ L A PRLMEP Y E+ P V +Y VL +
Sbjct: 797 DAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYYTVEVVAPADCVAAVYTVLAK 856
Query: 197 RRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPC 376
RRGHV ++ + G+PM+ + AY+PV +SFGF DLR +T GQAF F HWQ++PGDP
Sbjct: 857 RRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQAFCMSAFHHWQLVPGDPL 916
Query: 377 EP---------QSKPY---NVVQETRKRKGLKE 439
+ Q P+ + +TR+RKGL E
Sbjct: 917 DKSIVIKTLDVQPTPHLAREFMIKTRRRKGLSE 949
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 143 bits (347), Expect = 8e-35
Identities = 69/153 (45%), Positives = 95/153 (62%), Gaps = 12/153 (7%)
Frame = +2
Query: 17 EGTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNR 196
+ + T+ ++RGGGQ+IPT RRC Y+ L A PRLMEP Y E+ P V +Y VL +
Sbjct: 672 DAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYYTVEVVAPADCVAAVYTVLAK 731
Query: 197 RRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPC 376
RRGHV ++ + G+PM+ + AY+PV +SFGF DLR +T GQAF F HWQ++PGDP
Sbjct: 732 RRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQAFCMSAFHHWQLVPGDPL 791
Query: 377 EP---------QSKPY---NVVQETRKRKGLKE 439
+ Q P+ + +TR+RKGL E
Sbjct: 792 DKSIVIKTLDVQPTPHLAREFMIKTRRRKGLSE 824
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical protein
K10C3.5a protein.
Length = 894
Score = 70.5 bits (165), Expect = 9e-13
Identities = 37/107 (34%), Positives = 53/107 (49%)
Frame = +2
Query: 53 GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVA 232
GGQ++ + A RL+ +Y C + A+G ++ VL++R+ V E
Sbjct: 732 GGQMMTAIKASCSAAAKKLALRLVAAMYRCTVTTASQALGKVHAVLSQRKSKVLSEDINE 791
Query: 233 GTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 373
T +F V + +PV ESF F LR T G A Q F HWQV+ DP
Sbjct: 792 ATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 838
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/55 (43%), Positives = 28/55 (50%)
Frame = +2
Query: 209 VFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 373
V E T +F V + +PV ESF F LR T G A Q F HWQV+ DP
Sbjct: 595 VLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 649
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 35.1 bits (77), Expect = 0.044
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +2
Query: 119 LMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTAD 298
L+EP+ E P G + L +R + G I +A P+++ FG+T++
Sbjct: 642 LLEPIMKVEATVPTEFQGNVVTSLTQRNALITTTDSTEGYATVICEA--PLSDMFGYTSE 699
Query: 299 LRSNTGGQ 322
LRS T G+
Sbjct: 700 LRSLTEGK 707
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 30.3 bits (65), Expect = 1.2
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Frame = +2
Query: 53 GGQIIPT-----TRRCLYACLLTAQPRLMEPVYLCEIQCP-EVAVGGIYGVLNRRRGHVF 214
GG+I P ++C+ L + + L EPV +I+ + I L RRR H
Sbjct: 565 GGKINPALLSACAQKCVSEALSSGEMVLTEPVMEVQIEIRNDDPTQPILNELLRRRAHFE 624
Query: 215 EESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGG 319
T + + A LP++E+ + +R+ T G
Sbjct: 625 HSDATESTEIRRICAILPLSETENLSKTVRTLTSG 659
>AF068713-7|AAC17798.2| 359|Caenorhabditis elegans Hypothetical
protein T24A6.11 protein.
Length = 359
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -2
Query: 597 LLSHLRVCFNMMRNMCC*K*TCVKRFPYRYVFLICFNYVV 478
+L+ LR+C+ C + TC K FP ++V L+ ++VV
Sbjct: 290 ILTPLRICYTSCLFQHC-QITCQKNFPTKFVDLLSLSHVV 328
>AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical
protein F02E11.1 protein.
Length = 567
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 364 REDLPMVEYALREGLSAGVGTQIGSKTERLID 269
+ED+ +EY + E ++ +GTQ+ KT +D
Sbjct: 232 QEDVTRIEYLIHEYQNSDIGTQMLKKTRTAVD 263
>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical protein
F22E10.2 protein.
Length = 1324
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +2
Query: 53 GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRR 199
G Q + T RCL A +L + +M + + + A G ++ ++NR+
Sbjct: 1017 GDQTVDKTFRCLMAMMLCCEGIIMSAQFFPQFVGAKSAAGQMFNLINRQ 1065
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,463,359
Number of Sequences: 27780
Number of extensions: 345541
Number of successful extensions: 879
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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