Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0415
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    26   4.4  
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2...    25   7.7  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   7.7  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    25   7.7  

>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = +1

Query: 16  NISRSSSPTYEVPALRGRAATS*EYRPGPWPEKKGF*LQKINFF 147
           N + +S P +E+P+ +  A  S  ++    P++K   +++IN++
Sbjct: 19  NRTSTSRPLHEIPSYQSLARRSSTWKRANIPQQKPSLVRRINYY 62


>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 366 RCFSMNTMVSSIVRYGCTYIIVGISKY 446
           R F + T++S+IVR+ C Y I     Y
Sbjct: 54  RTFGIWTLLSAIVRFYCAYHITNPDVY 80


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 383  YYGIVYSKVWMYIYYSRNIQV-FFADLTLIRSISNT 487
            YYG  YS+  + ++Y  N +V F   L   R  S+T
Sbjct: 1403 YYGATYSRYLLSLFYKTNDKVNFLQFLKRFRRSSST 1438


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = +2

Query: 392 IVYSKVWMYIYYSRNIQVFFADLTLIRS 475
           I+ +++ +Y++Y  +I +FFA L L+R+
Sbjct: 335 ILPNQIQIYVWYGASISIFFA-LILLRT 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,826
Number of Sequences: 5004
Number of extensions: 49306
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)