Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0415
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381...    29   2.0  
11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600           28   4.5  
09_04_0627 - 19061106-19061474,19062067-19062909,19063395-190635...    28   4.5  
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210...    27   7.9  
01_04_0008 + 15041682-15041909,15042035-15042319,15042406-150427...    27   7.9  

>11_04_0340 -
           16536571-16536705,16536820-16536951,16537265-16538106,
           16538480-16538940,16539032-16540314,16540423-16541627,
           16541857-16542157
          Length = 1452

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/69 (20%), Positives = 34/69 (49%)
 Frame = +3

Query: 225 HLQRKCATHFEI*VLKYSYNGCSTLQTETHYCFTAEIGEVVVPARA*RCFSMNTMVSSIV 404
           HLQR C ++  +    + ++  + +Q + HY     + ++     A  C+++  + SS +
Sbjct: 478 HLQR-CFSYCSLFPEDHPFSAATLVQVDRHYVMHDLMHDLAQQVSAKECYTVRGLQSSTI 536

Query: 405 RYGCTYIIV 431
           R G  ++ +
Sbjct: 537 RQGIRHLSI 545


>11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600
          Length = 251

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -1

Query: 394 DTIVFIEKHRYARAGTTTSPISAVKQ*CVSVCRVEQPL*LYLRTYISKWVAHLRCRC 224
           D    +++ R+  A  +T      K      CR +Q     L T +  W AH RCRC
Sbjct: 80  DLTTCLQEGRWYFASESTEQYLQRKAAYERQCREQQSDWRVLTTALPPWEAHPRCRC 136


>09_04_0627 -
           19061106-19061474,19062067-19062909,19063395-19063501,
           19064301-19064332,19064384-19064663,19065092-19065475,
           19066730-19066803,19067244-19067310,19067415-19067486,
           19067941-19068000,19068683-19068734,19068874-19068943,
           19069110-19069372
          Length = 890

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 483 TPPGLSPMSLPTC 521
           TPPGL P+ LPTC
Sbjct: 384 TPPGLIPVGLPTC 396


>02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074,
            20921184-20921263,20922759-20922875,20923089-20923136,
            20923509-20923601,20923881-20923958,20924114-20924218,
            20924543-20925212,20925253-20925350,20925887-20925963,
            20926035-20926117,20926208-20926287,20927060-20927139,
            20927698-20927743,20928709-20929181,20929234-20929579
          Length = 2139

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 297  LQTETHYCFTAEIGEVVVPARA*RCFSMNTMVSSIV 404
            L +  H+C   + G +V+P R   C SMNT V  IV
Sbjct: 2048 LSSPFHHCRPIQEGVLVLPLR---CLSMNTTVWDIV 2080


>01_04_0008 +
           15041682-15041909,15042035-15042319,15042406-15042723,
           15044087-15044128,15045111-15045391,15045808-15045883,
           15046196-15046296,15047971-15048088,15048872-15049186
          Length = 587

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +2

Query: 38  PHTRSPR*E---GARRPRRSTGRAPGPKK 115
           P T SP  +   G  RPRR  GR PGP++
Sbjct: 4   PSTDSPAADQSPGRGRPRRRLGRKPGPRQ 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,015,153
Number of Sequences: 37544
Number of extensions: 334033
Number of successful extensions: 801
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)