Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0415
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1053| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.50 
SB_31550| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_17448| Best HMM Match : RVT_1 (HMM E-Value=0.00044)                 28   6.1  
SB_10195| Best HMM Match : CXC (HMM E-Value=0.003)                     28   6.1  
SB_51354| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_1053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 689

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 6   VCSEHQQIVKSHIRGPRAKRARGDLVGVPAGPLARK-KGFLIAKDQ 140
           V  EH+ ++    +GP A++ +G L     GPLA K KG +  KD+
Sbjct: 429 VAVEHKGLLAEKDKGPLAEKDKGPLAEKDKGPLAEKDKGPVAEKDK 474



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 6   VCSEHQQIVKSHIRGPRAKRARGDLVGVPAGPLARK-KGFLIAKDQ 140
           V  EH+  V    +GP A   +G L     GPLA K KG L  KD+
Sbjct: 413 VAEEHKGPVAEKDKGPVAVEHKGLLAEKDKGPLAEKDKGPLAEKDK 458



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 6   VCSEHQQIVKSHIRGPRAKRARGDLVGVPAGPLARK 113
           +  EH+  V    +GP A++ +G + G   GPLA K
Sbjct: 493 MAEEHKGPVAEKDKGPVAEKDKGPVAGKDKGPLAEK 528



 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 6   VCSEHQQIVKSHIRGPRAKRARGDLVGVPAGPLARK-KGFLIAKDQ 140
           V  EH+  +    +GP A++ +G L     GP+A K KG L  KD+
Sbjct: 533 VAVEHKGPLAEKDKGPLAEKDKGPLAEKDKGPVAGKDKGPLAEKDK 578


>SB_31550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -2

Query: 510 SSWGSNREVFDIDRIKVKSAKNTWIFLL 427
           S WGSNRE +D+D I V + +N  IF L
Sbjct: 53  SYWGSNREPYDLD-ILVTNTRNEVIFPL 79


>SB_17448| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
          Length = 890

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 406 LTIDDTIVFIEKHRYARAGTTT 341
           + I+D IVF + H Y+R GT+T
Sbjct: 269 ININDYIVFRKDHSYSRGGTST 290


>SB_10195| Best HMM Match : CXC (HMM E-Value=0.003)
          Length = 1365

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 60  KRARGDLVGVPAGPLARKKGFLIAKD 137
           K +RG L+G+P  P AR K FLIA +
Sbjct: 759 KVSRG-LIGIPLNPNARSKYFLIAPE 783


>SB_51354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 368 PLCTGRYHHLAYFCREAV-MRFGLQGGAAVVTILENLYLKV 249
           PL TG  H  A  CREAV +     GG A    ++   L V
Sbjct: 13  PLDTGLLHEAANICREAVNITVNSSGGVAAADNVDTTTLSV 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,285,078
Number of Sequences: 59808
Number of extensions: 389096
Number of successful extensions: 860
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)