Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0415
(568 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK124777-1|BAC85943.1| 210|Homo sapiens protein ( Homo sapiens ... 33 0.70
L39891-1|AAB59488.1| 3638|Homo sapiens polycystic kidney disease... 30 6.5
BC032446-1|AAH32446.1| 767|Homo sapiens cold shock domain conta... 30 6.5
AY049788-1|AAL15445.1| 708|Homo sapiens NRAS-related protein pr... 30 6.5
AL096773-5|CAI18825.1| 798|Homo sapiens cold shock domain conta... 30 6.5
AL096773-4|CAI18826.1| 767|Homo sapiens cold shock domain conta... 30 6.5
AL050150-1|CAB43294.1| 369|Homo sapiens hypothetical protein pr... 30 6.5
AK022528-1|BAB14080.1| 767|Homo sapiens protein ( Homo sapiens ... 30 6.5
AK022516-1|BAB14073.1| 767|Homo sapiens protein ( Homo sapiens ... 30 6.5
AF085692-1|AAD02847.1| 510|Homo sapiens multidrug resistance-as... 30 6.5
AB020692-1|BAA74908.2| 826|Homo sapiens KIAA0885 protein protein. 30 6.5
>AK124777-1|BAC85943.1| 210|Homo sapiens protein ( Homo sapiens
cDNA FLJ42787 fis, clone BRAWH3006792. ).
Length = 210
Score = 33.1 bits (72), Expect = 0.70
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 47 RSPR*EGARRPRRSTGRAPGPKKR 118
RSPR G+R+PR S R PG K+R
Sbjct: 165 RSPRARGSRKPRSSRTRGPGKKRR 188
>L39891-1|AAB59488.1| 3638|Homo sapiens polycystic kidney
disease-associated protein protein.
Length = 3638
Score = 29.9 bits (64), Expect = 6.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -3
Query: 113 FSGQGPGRYSYEVAARPLSAGTSYVGLDDLLMFGA 9
F+G GPGR + A L AGT +V L M G+
Sbjct: 1204 FTGPGPGRQRQRLLAHRLEAGTYHVQLRATNMLGS 1238
>BC032446-1|AAH32446.1| 767|Homo sapiens cold shock domain
containing E1, RNA-binding protein.
Length = 767
Score = 29.9 bits (64), Expect = 6.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 530 FTLTCR*AHGAQTGRCLILIGSKSNQQRILGY 435
F+++ + G Q C+ L+G SN +R+LGY
Sbjct: 460 FSISDKQRPGQQVATCVRLLGRNSNSKRLLGY 491
>AY049788-1|AAL15445.1| 708|Homo sapiens NRAS-related protein
protein.
Length = 708
Score = 29.9 bits (64), Expect = 6.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 530 FTLTCR*AHGAQTGRCLILIGSKSNQQRILGY 435
F+++ + G Q C+ L+G SN +R+LGY
Sbjct: 460 FSISDKQRPGQQVATCVRLLGRNSNSKRLLGY 491
>AL096773-5|CAI18825.1| 798|Homo sapiens cold shock domain
containing E1, RNA-binding protein.
Length = 798
Score = 29.9 bits (64), Expect = 6.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 530 FTLTCR*AHGAQTGRCLILIGSKSNQQRILGY 435
F+++ + G Q C+ L+G SN +R+LGY
Sbjct: 491 FSISDKQRPGQQVATCVRLLGRNSNSKRLLGY 522
>AL096773-4|CAI18826.1| 767|Homo sapiens cold shock domain
containing E1, RNA-binding protein.
Length = 767
Score = 29.9 bits (64), Expect = 6.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 530 FTLTCR*AHGAQTGRCLILIGSKSNQQRILGY 435
F+++ + G Q C+ L+G SN +R+LGY
Sbjct: 460 FSISDKQRPGQQVATCVRLLGRNSNSKRLLGY 491
>AL050150-1|CAB43294.1| 369|Homo sapiens hypothetical protein
protein.
Length = 369
Score = 29.9 bits (64), Expect = 6.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 530 FTLTCR*AHGAQTGRCLILIGSKSNQQRILGY 435
F+++ + G Q C+ L+G SN +R+LGY
Sbjct: 62 FSISDKQRPGQQVATCVRLLGRNSNSKRLLGY 93
>AK022528-1|BAB14080.1| 767|Homo sapiens protein ( Homo sapiens
cDNA FLJ12466 fis, clone NT2RM1000826, highly similar to
UNR PROTEIN. ).
Length = 767
Score = 29.9 bits (64), Expect = 6.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 530 FTLTCR*AHGAQTGRCLILIGSKSNQQRILGY 435
F+++ + G Q C+ L+G SN +R+LGY
Sbjct: 460 FSISDKQRPGQQVATCVRLLGRNSNSKRLLGY 491
>AK022516-1|BAB14073.1| 767|Homo sapiens protein ( Homo sapiens
cDNA FLJ12454 fis, clone NT2RM1000555, highly similar to
UNR PROTEIN. ).
Length = 767
Score = 29.9 bits (64), Expect = 6.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 530 FTLTCR*AHGAQTGRCLILIGSKSNQQRILGY 435
F+++ + G Q C+ L+G SN +R+LGY
Sbjct: 460 FSISDKQRPGQQVATCVRLLGRNSNSKRLLGY 491
>AF085692-1|AAD02847.1| 510|Homo sapiens multidrug
resistance-associated protein 3B protein.
Length = 510
Score = 29.9 bits (64), Expect = 6.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 109 RARGPAGTPTRSPRALLARGP 47
R RG AG P ++P ALL GP
Sbjct: 301 RGRGAAGCPAQAPEALLPEGP 321
>AB020692-1|BAA74908.2| 826|Homo sapiens KIAA0885 protein protein.
Length = 826
Score = 29.9 bits (64), Expect = 6.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 530 FTLTCR*AHGAQTGRCLILIGSKSNQQRILGY 435
F+++ + G Q C+ L+G SN +R+LGY
Sbjct: 519 FSISDKQRPGQQVATCVRLLGRNSNSKRLLGY 550
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,647,185
Number of Sequences: 237096
Number of extensions: 1985087
Number of successful extensions: 4016
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4013
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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