Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0415
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41037-3|AAA82389.1|  378|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    28   5.4  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      28   5.4  
AL110479-20|CAB54371.1|  338|Caenorhabditis elegans Hypothetical...    27   9.4  

>U41037-3|AAA82389.1|  378|Caenorhabditis elegans Hypothetical
           protein T24C12.1 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 494 TGRCLILIGSKSNQQRILGYSYYNICTSI 408
           T    +LI  K N   +LGY + NIC ++
Sbjct: 102 TSPLFVLIPIKKNDPYVLGYCFINICLAL 130


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
            guidance protein 2,isoform a protein.
          Length = 2886

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 237  KCATHFEI*VLKYSYNGCSTLQTETHYCFTAEIGE 341
            K A  F   VL+Y  +GC  L  ET  C  AE+ E
Sbjct: 2106 KDAQQFMKCVLQYICDGCIALNVETLMCLLAEMTE 2140


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 237  KCATHFEI*VLKYSYNGCSTLQTETHYCFTAEIGE 341
            K A  F   VL+Y  +GC  L  ET  C  AE+ E
Sbjct: 2134 KDAQQFMKCVLQYICDGCIALNVETLMCLLAEMTE 2168


>AL110479-20|CAB54371.1|  338|Caenorhabditis elegans Hypothetical
           protein Y105C5B.23 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 199 VKWLLEPIDIYNVNALPTLRYKF 267
           +K  +E IDIYN NA+  LR K+
Sbjct: 87  IKIGIETIDIYNPNAIQDLRSKY 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,410,512
Number of Sequences: 27780
Number of extensions: 283195
Number of successful extensions: 659
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)