Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0415
         (568 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03640.1 68418.m00323 protein kinase family protein contains ...    31   0.54 
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR...    31   0.54 
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR...    31   0.54 
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR...    31   0.54 
At1g77300.1 68414.m09002 SET domain-containing protein similar t...    28   5.0  

>At5g03640.1 68418.m00323 protein kinase family protein contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 926

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 23/70 (32%), Positives = 33/70 (47%)
 Frame = -1

Query: 472 SDQSQISKEYLDIPTIIYVHPYLTIDDTIVFIEKHRYARAGTTTSPISAVKQ*CVSVCRV 293
           S  SQ SK Y D  TI+  H  L++DD  + IE   +     ++SP S   +  V +  V
Sbjct: 198 SQNSQTSKRYCDEMTILKKHKNLSLDDQEMSIENKNFG----SSSPGSGNNKTVVGLKSV 253

Query: 292 EQPL*LYLRT 263
            +   LY  T
Sbjct: 254 RKVRLLYANT 263


>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 20  SADRQVPHTRSPR*EGARR-PRRSTGRAPGPKKR 118
           S  R    +RSP+ + +RR P +ST R+PGP+ +
Sbjct: 225 SRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSK 258


>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 285

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 20  SADRQVPHTRSPR*EGARR-PRRSTGRAPGPKKR 118
           S  R    +RSP+ + +RR P +ST R+PGP+ +
Sbjct: 225 SRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSK 258


>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 20  SADRQVPHTRSPR*EGARR-PRRSTGRAPGPKKR 118
           S  R    +RSP+ + +RR P +ST R+PGP+ +
Sbjct: 225 SRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSK 258


>At1g77300.1 68414.m09002 SET domain-containing protein similar to
            huntingtin interacting protein 1 [Homo sapiens]
            GI:12697196; contains Pfam profile PF00856: SET domain
          Length = 1759

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 386  SIHRKTPLCTGRYHHLAYFCRE 321
            S H++ P CTG Y+  A FCR+
Sbjct: 1447 SCHKENP-CTGAYNQKASFCRD 1467


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,581,092
Number of Sequences: 28952
Number of extensions: 262746
Number of successful extensions: 568
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)