Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0414
         (647 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6LFK5 Cluster: RNA-binding protein, putative; n=1; Pla...    34   2.6  
UniRef50_A4UC09 Cluster: Putative uncharacterized protein; n=2; ...    34   2.6  
UniRef50_UPI0000DC0CD1 Cluster: UPI0000DC0CD1 related cluster; n...    33   4.5  
UniRef50_Q234J4 Cluster: Putative uncharacterized protein; n=1; ...    33   4.5  
UniRef50_A5E5F0 Cluster: Predicted protein; n=1; Lodderomyces el...    33   6.0  
UniRef50_Q54NA5 Cluster: Putative uncharacterized protein; n=1; ...    33   7.9  

>UniRef50_Q6LFK5 Cluster: RNA-binding protein, putative; n=1;
           Plasmodium falciparum 3D7|Rep: RNA-binding protein,
           putative - Plasmodium falciparum (isolate 3D7)
          Length = 582

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = +1

Query: 421 SYKNMPRCIHNYVRISLKTNREKTSASLDLRQFSVNCGMVISFIKDCCNYRNVNLSMTIV 600
           ++KN P     Y +I  KT+   T+AS    +  +N  MV+S I+   N  N++   T  
Sbjct: 39  TFKNFPGLNQKYCQIEFKTSEGITNASRLNGESLLNVPMVVSVIEPIINNTNLSELSTTE 98

Query: 601 IDKRI 615
            DK +
Sbjct: 99  CDKNV 103


>UniRef50_A4UC09 Cluster: Putative uncharacterized protein; n=2;
           Magnaporthe grisea|Rep: Putative uncharacterized protein
           - Magnaporthe grisea (Rice blast fungus) (Pyricularia
           grisea)
          Length = 550

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = +1

Query: 367 SIVINGSMPFCQNTGFL-ESYKNMPRCIHNYVRISLKTNREKTSASLDLRQFSVNCGMVI 543
           +I++N ++P C     L   Y  + R +   V  +L  + EK+  ++D+     NC +++
Sbjct: 318 AILVN-TLPSCYWMLLLIHLYPELHRELQKEVDAALLIDEEKSHITIDITSVKNNCPLLL 376

Query: 544 SFIKDCCNYRNVNLSMTIV 600
           S  K+   YR +  ++ IV
Sbjct: 377 STFKESLRYRGMGTALRIV 395


>UniRef50_UPI0000DC0CD1 Cluster: UPI0000DC0CD1 related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DC0CD1 UniRef100 entry -
           Rattus norvegicus
          Length = 270

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 23/87 (26%), Positives = 38/87 (43%)
 Frame = -3

Query: 636 HTVYLITYSLIDYYRHR*VHITIVTAIFNKTYHHTTIYRKLTQIE*RRSFLSIRLQRYTY 457
           H VY  T++ I  + H   HI   T I    + H  +Y  +       +  S+ + R  Y
Sbjct: 26  HNVYPYTHTHIHTHTHIHAHIHTCTHIHTHLHTHEYLYSHIYIYLHACTHRSVFIHRDMY 85

Query: 456 IVMYTSWHIFVRLQKARVLTKWHAAIY 376
           I  YT  H+++ +     + K H +IY
Sbjct: 86  INTYTYIHMYINMYTHMHVYK-HVSIY 111


>UniRef50_Q234J4 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 2175

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = +1

Query: 40   LNNNLNVCKR*RTNHTTIKTHTFGYKQQYAAKSRGSSHVSKKQASVVAPHSFRWSEENRG 219
            +NNN+N+  +   N+++ +   +    QY A  + +S   +KQ     PHS  +S  N  
Sbjct: 1360 INNNINIIAKHSINNSSSQHSNYTQNNQYVANQQVNSQQQRKQNKKSPPHS-NYSNLNSY 1418

Query: 220  RNTSKQ 237
             N   Q
Sbjct: 1419 NNQLNQ 1424


>UniRef50_A5E5F0 Cluster: Predicted protein; n=1; Lodderomyces
           elongisporus NRRL YB-4239|Rep: Predicted protein -
           Lodderomyces elongisporus (Yeast) (Saccharomyces
           elongisporus)
          Length = 151

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 136 FWLHTAVCIQMYVF*SLCDLFFTVYK 59
           FW +   CIQ+++F  LC LFF  YK
Sbjct: 117 FWPNCTRCIQIHIFSILCGLFFFFYK 142


>UniRef50_Q54NA5 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1192

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
 Frame = -3

Query: 633 TVYLITYSLIDYYRHR*VHITIVTAIFNKTY-HHTTIYRKLTQIE*RRSFLSIRLQRYTY 457
           TV+L+++ L D    R  HIT++T  F+K Y +   I  K+++++  + F         +
Sbjct: 603 TVFLLSHKLWDKKSGRRQHITMITKTFSKWYINILKIKIKISKVDYPKDFPQF------H 656

Query: 456 IVMYTSWHIFVRLQKARVLTKWHAAI 379
           I +   + I  ++ + RVL KW  ++
Sbjct: 657 ITLKERFKIIWKIIEKRVLGKWRYSL 682


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 620,888,886
Number of Sequences: 1657284
Number of extensions: 12032800
Number of successful extensions: 32694
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32673
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)