Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0414
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc...    31   0.14 
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    28   1.3  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   7.1  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   9.4  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.4  

>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +2

Query: 71  EEQITQ-RLKHIHLDTNSSMQPKAEVPPMCPKSKLPLLHLTPSGGQKKIEGATPQS 235
           EEQ T+  LKH  LD N   +  AE+  +CP S L LLH   +G  +K E +  ++
Sbjct: 4   EEQRTRDELKHKLLDLNQLHEQLAELRTICP-SLLKLLH-PETGTSRKFEKSAQEA 57


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 375 NNTF-ILTSRVEKYPIPYGKNSWC*TFDC 292
           N+ F IL   +E+ P+PY  N+W  T  C
Sbjct: 320 NSLFRILDMEIERQPMPYPYNTWISTIRC 348


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 489 FLSIRLQRYTYIVMYTSWHIFVRLQKARVLTKWH 388
           FL+   QR   + +Y+SW I + L  AR+    H
Sbjct: 259 FLNSFNQRRNSLQLYSSWFIILILSDARIKENTH 292


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/51 (25%), Positives = 20/51 (39%)
 Frame = +2

Query: 98  HIHLDTNSSMQPKAEVPPMCPKSKLPLLHLTPSGGQKKIEGATPQSKSNPW 250
           H H   N+   P     P+ P + +PL H +P        G   Q+   P+
Sbjct: 181 HPHFHNNNYPPPYCFQSPVSPGATVPLQHHSPYPSDNGFPGHRRQTHFAPY 231


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 253 TEASAGHPSHAASTIESSTPRVLSVR 330
           T  SAGHPS ++ST+ +     L+ R
Sbjct: 31  TSTSAGHPSSSSSTLPNYAASSLNSR 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,425
Number of Sequences: 5004
Number of extensions: 55320
Number of successful extensions: 155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)