Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0414
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0239 + 1744353-1746365 29 3.2
08_02_0592 + 19064025-19066596,19067036-19067084,19068530-190686... 28 7.4
01_01_0400 + 3038298-3038863,3039057-3039411,3039504-3040232 28 7.4
12_02_1075 - 25854662-25855015,25855895-25856045,25856141-258563... 27 9.7
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 27 9.7
08_01_0162 - 1302497-1302787,1304608-1305271,1305380-1306927,130... 27 9.7
04_01_0078 - 879016-881288,884676-885141 27 9.7
03_06_0637 - 35219212-35219754,35220405-35220587 27 9.7
03_03_0150 + 14872035-14872472,14874895-14875725 27 9.7
>07_01_0239 + 1744353-1746365
Length = 670
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -2
Query: 544 LSPYHNLPKTDANRVTPKFSLDSSSTIYV--HSYVYIVAYFC 425
LS HNL K + + FS SS+ +Y+ H++ + +A FC
Sbjct: 206 LSATHNLSKLLLDHMYVGFSSSSSAALYISGHAHGHFIAGFC 247
>08_02_0592 +
19064025-19066596,19067036-19067084,19068530-19068605,
19068767-19068922
Length = 950
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 403 NTGFLESYKNMPRCIHNYVRISLKTNREKTSASLDLRQFSVNCGMVISFIKD-CCNYRNV 579
+ G LE Y N+P C+ + + + +++ + R+F C ++ ++ R +
Sbjct: 672 HNGKLELYLNVPSCVERHRQHGSENGNDRSKIRMLCRRFQFICNALLHAVEQGSLMVRRI 731
Query: 580 NLSMTIVIDK 609
+L +I K
Sbjct: 732 DLEADKIIRK 741
>01_01_0400 + 3038298-3038863,3039057-3039411,3039504-3040232
Length = 549
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 134 KAEVPPMCPKSKLPLLHLTPSGGQKKIEGATPQSKS 241
K +P C S++ L HL KIE ATP+ +S
Sbjct: 324 KRGIPSDCSDSQIMLWHLDMPRHTPKIEQATPEKES 359
>12_02_1075 -
25854662-25855015,25855895-25856045,25856141-25856378,
25856494-25856704,25856973-25857088,25857844-25857877,
25857996-25858253
Length = 453
Score = 27.5 bits (58), Expect = 9.7
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +1
Query: 280 HAASTIESSTPRVLSVRNRVFFYSRR*NKSIVINGSMPFCQNTGFLESY--KNMPRCIHN 453
H S+ SS+PRVL V YS R S + G + Q F+E++ K+ P I N
Sbjct: 46 HTLSSSFSSSPRVLCWVLAVLGYSYRLQASSLSAGELTDLQGKFFMETFFRKDTP-IIRN 104
Query: 454 YVRISLKTNREKT 492
S K R+ T
Sbjct: 105 VKIYSSKELRKAT 117
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 520 KTDANRVTPKFSLDSSSTIYVHSYVYIVAYFCT 422
K + +R+T F+ + + YV S V +V+Y CT
Sbjct: 803 KENWDRITKTFAASAILSDYVKSIVTLVSYICT 835
>08_01_0162 -
1302497-1302787,1304608-1305271,1305380-1306927,
1307360-1308768
Length = 1303
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 116 NSSMQPKAEVPPMCPKSKLPLLHLTPSGGQKKIEGAT 226
+SS++PKA PP+ P S P + SG + GAT
Sbjct: 781 SSSLEPKAAPPPVAPPSPSP-PPTSGSGSGGVVAGAT 816
>04_01_0078 - 879016-881288,884676-885141
Length = 912
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 222 QHLKASLILGY*SLRWTSLPRRLHN 296
+HL + LG+ S W SLP L N
Sbjct: 834 EHLTSLAYLGFTSCHWNSLPNNLEN 858
>03_06_0637 - 35219212-35219754,35220405-35220587
Length = 241
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 490 FSLDSSSTIYVHSYVYIVAYFCTTPKSP 407
FSLDS STI V + Y+C PK P
Sbjct: 43 FSLDSKSTIGVEFATRTIQYYC-FPKGP 69
>03_03_0150 + 14872035-14872472,14874895-14875725
Length = 422
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/89 (23%), Positives = 44/89 (49%)
Frame = +1
Query: 193 FRWSEENRGRNTSKQV*SLATEASAGHPSHAASTIESSTPRVLSVRNRVFFYSRR*NKSI 372
FR + ++ R S + S AT A+A + + + + + R+LSV + ++ + S+
Sbjct: 20 FRSNSDHLMRLHSTWINSAATPAAAPYSRESLAMLAA---RLLSVSDDHLQRQQQQHVSM 76
Query: 373 VINGSMPFCQNTGFLESYKNMPRCIHNYV 459
+I+ S+P C G ++K + + V
Sbjct: 77 IISTSLPGCTTGGVAPAFKEAIEALRDVV 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,434,869
Number of Sequences: 37544
Number of extensions: 324477
Number of successful extensions: 861
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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