Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0414
(647 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 31 0.66
At5g23730.1 68418.m02782 transducin family protein / WD-40 repea... 29 3.5
At4g08470.1 68417.m01398 mitogen-activated protein kinase, putat... 29 3.5
At1g29940.1 68414.m03658 DNA-directed RNA polymerase family prot... 29 3.5
At3g48860.2 68416.m05337 expressed protein 28 4.7
At3g48860.1 68416.m05336 expressed protein 28 4.7
At2g24420.2 68415.m02918 DNA repair ATPase-related contains 2 tr... 28 4.7
At2g24420.1 68415.m02917 DNA repair ATPase-related contains 2 tr... 28 4.7
At1g01520.1 68414.m00068 myb family transcription factor similar... 28 4.7
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 31.1 bits (67), Expect = 0.66
Identities = 22/60 (36%), Positives = 29/60 (48%)
Frame = +1
Query: 136 SRGSSHVSKKQASVVAPHSFRWSEENRGRNTSKQV*SLATEASAGHPSHAASTIESSTPR 315
S GSS S AS+ SFR S +NR +N Q+ L + S+ S A ES + R
Sbjct: 116 SSGSSVSSFSTASLAEAFSFRGSFQNRAKNIDDQI-LLTRDYSSNSSSIAEGLSESDSSR 174
>At5g23730.1 68418.m02782 transducin family protein / WD-40 repeat
family protein contains similarity to photomorphogenesis
repressor protein; contains Pfam PF00400: WD domain,
G-beta repeat (5 copies)
Length = 243
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 322 SVRNRVFFYSRR*NKSIVINGSMPFCQNTG 411
S NRVF Y RR K + ++G P N+G
Sbjct: 175 SENNRVFVYDRRWGKPVWVDGFEPVGMNSG 204
>At4g08470.1 68417.m01398 mitogen-activated protein kinase, putative
similar to mitogen-activated protein kinase [Arabidopsis
thaliana] gi|1255448|dbj|BAA09057; contains Pfam
PF00069: Protein kinase domain
Length = 560
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 326 TERTRGVELSIVEAAWEGCPAEASVAKD*TCFEVLRPRFSS 204
TE TRG+ + + + A E CP + A + ++ P ++S
Sbjct: 88 TEETRGMFVQLGDTAHEACPFATNEADSSSTVSIISPSYAS 128
>At1g29940.1 68414.m03658 DNA-directed RNA polymerase family protein
similar to SP|P22138 DNA-directed RNA polymerase I 135
kDa polypeptide (EC 2.7.7.6) (RNA polymerase I subunit
2) {Saccharomyces cerevisiae}; contains Pfam profiles
PF04563; RNA polymerase beta subunit, PF04560: RNA
polymerase Rpb2 domain 7, PF04561: RNA polymerase Rpb2
domain 2, PF04565: RNA polymerase Rpb2 domain 3,
PF00562: RNA polymerase Rpb2 domain 6
Length = 1114
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 427 KNMPRCIHNYVRISLKTNREKTSASLDLRQ 516
KN PR I + LKT KT + LDL+Q
Sbjct: 364 KNPPRSIGTSIETLLKTGALKTQSGLDLQQ 393
>At3g48860.2 68416.m05337 expressed protein
Length = 577
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 217 GRNTSKQV*SLATEASAGHPSHAA-STIESSTPRVL 321
GRN ++QV S ASAG PS +A ST + P ++
Sbjct: 134 GRNFAEQVPSSVRSASAGRPSMSARSTTPTPIPNLM 169
>At3g48860.1 68416.m05336 expressed protein
Length = 494
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 217 GRNTSKQV*SLATEASAGHPSHAA-STIESSTPRVL 321
GRN ++QV S ASAG PS +A ST + P ++
Sbjct: 134 GRNFAEQVPSSVRSASAGRPSMSARSTTPTPIPNLM 169
>At2g24420.2 68415.m02918 DNA repair ATPase-related contains 2
transmembrane domains; similar to DNA double-strand
break repair rad50 ATPase. (Swiss-Prot:O33600)
[Sulfolobus acidocaldarius]
Length = 440
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 88 TIKTHTFGYKQQYAAKSRGSSHVSKKQASVVAPHSFRWSE 207
T+KTH + Q + K++ + H SK S V PH ++ E
Sbjct: 272 TVKTHVEPHVQTLSTKAKEAYHASK---SAVTPHIVKFQE 308
>At2g24420.1 68415.m02917 DNA repair ATPase-related contains 2
transmembrane domains; similar to DNA double-strand
break repair rad50 ATPase. (Swiss-Prot:O33600)
[Sulfolobus acidocaldarius]
Length = 440
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 88 TIKTHTFGYKQQYAAKSRGSSHVSKKQASVVAPHSFRWSE 207
T+KTH + Q + K++ + H SK S V PH ++ E
Sbjct: 272 TVKTHVEPHVQTLSTKAKEAYHASK---SAVTPHIVKFQE 308
>At1g01520.1 68414.m00068 myb family transcription factor similar to
myb-related protein GI:2505876 from [Arabidopsis
thaliana]
Length = 287
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Frame = -2
Query: 523 PKTDAN----RVTPKFSLDSSSTIYVHSYVY 443
PK AN + PKF+L SS+ ++ H Y+Y
Sbjct: 123 PKRKANHPYPQKAPKFTLSSSNALFQHDYLY 153
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,662,924
Number of Sequences: 28952
Number of extensions: 276170
Number of successful extensions: 725
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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