Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0413
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    27   1.5  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   2.0  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    27   2.0  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    26   3.4  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   6.0  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   7.9  

>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 498 TRPMYKGSPSSVSPPGNAPG-GTLDPLVGTQLFGPPTKIWY 379
           T P    S S + PPGN PG   + P++     G P++  Y
Sbjct: 525 TAPSQPASLSLLGPPGNTPGHRNVPPILKRSSIGTPSQQAY 565


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 495 RPMYKGSPSSVSPPGNAPGGTLDPLVGT 412
           RP+   SPSS S   +A  G ++P VGT
Sbjct: 187 RPVLDRSPSSFSQSRSAVSGNMNPGVGT 214


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 513 LPSWRTRPMYKGSPSSVSPPGNAPGGTLD 427
           LP  RT   Y+ +PSS     NAP  T +
Sbjct: 35  LPQDRTTSTYRATPSSADAGYNAPSSTFE 63


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 307 GSWHLREQHEPHTEVLLSSPVLPQRRQEV 221
           G  HL+EQ     +  +S P+LP ++ E+
Sbjct: 98  GVKHLQEQSSKEIKNPISQPILPNKKDEI 126


>SPAC9G1.10c |||inositol polyphosphate phosphatase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 516  RLPSWRTRPMYKGSPSSVS 460
            R+P+W  R  Y+GSP  +S
Sbjct: 1082 RVPAWCDRICYRGSPDYIS 1100


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = -3

Query: 474 PSSVSPPGNAPGGTLDPLVGTQLFGPPTKIWY*GFPCSIPPXWNVSATMRRNEFTRD--- 304
           PSS + P   PG    P+ G   F   T      F CS P   +VSA    N F+ D   
Sbjct: 336 PSSKNRP--RPGDWNCPMCGFSNFQRRTSC----FRCSFPGPTHVSAATGSNTFSPDFPY 389

Query: 303 RGTFVNSTSH 274
             ++ N +SH
Sbjct: 390 GNSYGNGSSH 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,616
Number of Sequences: 5004
Number of extensions: 47233
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)