Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0413
(572 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0958 - 23044708-23046045,23046131-23046363,23047059-230471... 31 0.65
08_02_0956 + 23026108-23027146,23027255-23027395,23029334-230295... 31 0.65
03_02_0630 + 9964593-9964738,9965548-9965603,9965895-9966745,996... 29 2.6
07_03_0927 - 22642670-22643023 28 4.6
03_05_0524 - 25181432-25181483,25181565-25181691,25181776-251818... 28 4.6
02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023... 28 4.6
10_01_0306 - 3372952-3373929 27 8.0
10_01_0304 - 3356541-3357518 27 8.0
10_01_0302 + 3320730-3321710 27 8.0
09_06_0081 + 20745627-20748144,20748211-20748308 27 8.0
01_01_1218 + 9846644-9847837 27 8.0
>08_02_0958 -
23044708-23046045,23046131-23046363,23047059-23047199,
23047296-23048334
Length = 916
Score = 31.1 bits (67), Expect = 0.65
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 274 VARAVHEGATIPGKL--VPSHGCAYVPXGWY*TWKASIPDLSRRPKQL 411
+AR +H G P L V +HG VP G + TW + L +RP +L
Sbjct: 127 LARLMHHGFITPAALHFVRNHGA--VPRGDWSTWTVEVTGLVKRPMRL 172
>08_02_0956 +
23026108-23027146,23027255-23027395,23029334-23029566,
23029652-23030989
Length = 916
Score = 31.1 bits (67), Expect = 0.65
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 274 VARAVHEGATIPGKL--VPSHGCAYVPXGWY*TWKASIPDLSRRPKQL 411
+AR +H G P L V +HG VP G + TW + L +RP +L
Sbjct: 127 LARLMHHGFITPAALHYVRNHGA--VPRGDWSTWTVDVTGLVKRPMRL 172
>03_02_0630 +
9964593-9964738,9965548-9965603,9965895-9966745,
9966848-9967046,9967246-9967425,9967591-9967967,
9968625-9968765
Length = 649
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 474 ENLYTLAVSATKVASPPARFNSLTASATFRLV 569
EN+ T+ SA+K+A+PPA S A++ ++
Sbjct: 231 ENIDTITDSASKIATPPATITSFGAASPVSVI 262
>07_03_0927 - 22642670-22643023
Length = 117
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Frame = +2
Query: 356 GIEHGKPQY---QILVGGPNNWVPTSGSNVPPGAFPGGET 466
G++H P Q L G + WVP G VP PG +
Sbjct: 77 GVDHSVPAAEHGQFLPGADDTWVPNPGFEVPNPFQPGSSS 116
>03_05_0524 -
25181432-25181483,25181565-25181691,25181776-25181826,
25182159-25182314,25182405-25182905,25182999-25183713,
25183797-25183867,25183974-25184103,25185706-25186167
Length = 754
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +2
Query: 416 PTSGSNVPPGA--FPGGETEDGEPLYIGRVRHEGSLTTGKVQ 535
P G PPG +PG + G+P + H+G+ G Q
Sbjct: 8 PGRGGGAPPGMTPWPGPPPQPGQPAVVYTALHQGAYQPGVAQ 49
>02_05_0938 +
32901143-32901215,32901841-32901982,32902243-32902314,
32902573-32902644,32902711-32902782,32902913-32902948,
32903001-32903072,32903319-32903387,32903483-32903554,
32903668-32903739,32903838-32903909,32904153-32904224,
32904470-32904541,32904623-32904694,32904782-32904853,
32904911-32905003,32905150-32905218,32905315-32905386,
32905479-32905552,32905643-32905771,32905966-32906331,
32906584-32906954,32907522-32907890
Length = 884
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 453 PVEKLKMENLYTLAVSATKVASP-PARFNSL 542
P+E KM+NL TL +S VA P P+ SL
Sbjct: 311 PIELAKMKNLDTLDLSCNMVAGPIPSAIGSL 341
>10_01_0306 - 3372952-3373929
Length = 325
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -3
Query: 480 GSPSSVSPPGNAPGGTLDPLVGTQLFGPPTKIW 382
G P + PG P + + L G + +GP +W
Sbjct: 197 GKPYDLCRPGTLPYTSPEQLAGNRCYGPAVDMW 229
>10_01_0304 - 3356541-3357518
Length = 325
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -3
Query: 480 GSPSSVSPPGNAPGGTLDPLVGTQLFGPPTKIW 382
G P + PG P + + L G + +GP +W
Sbjct: 197 GKPYDLCRPGTLPYTSPEQLAGNRCYGPAVDMW 229
>10_01_0302 + 3320730-3321710
Length = 326
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -3
Query: 480 GSPSSVSPPGNAPGGTLDPLVGTQLFGPPTKIW 382
G P + PG P + + L G + +GP +W
Sbjct: 198 GKPYDLCRPGTLPYTSPEQLAGNRCYGPAVDMW 230
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 369 PCSIPPXWNVSATMRRNEFTRDRGTFVNSTSHIQRFS*AVLS 244
P +PP + VS T R F D + +ST H+ S A+ S
Sbjct: 455 PADVPPGFIVSLTTARYSFDYDGVSSSSSTPHVPTTSLALRS 496
>01_01_1218 + 9846644-9847837
Length = 397
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 453 PVEKLKMENLYTLAVSATKVASPPARFNSLTASATFRL 566
P +KM++L LA++ TK+ S PA L T L
Sbjct: 47 PSSIMKMKHLQFLALNNTKIQSLPAEIGQLQTLQTLEL 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,829,736
Number of Sequences: 37544
Number of extensions: 375536
Number of successful extensions: 1211
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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