Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0413
         (572 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9725| Best HMM Match : GETHR (HMM E-Value=0.00026)                  33   0.13 
SB_34205| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_20077| Best HMM Match : zf-RanBP (HMM E-Value=0.24)                 31   0.67 
SB_24696| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00023)          29   2.0  
SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)                   29   2.0  
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_23942| Best HMM Match : 5-nucleotidase (HMM E-Value=4)              29   3.6  
SB_54954| Best HMM Match : zf-RanBP (HMM E-Value=2.1)                  28   4.7  
SB_47880| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_44302| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_42153| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_49160| Best HMM Match : IBR (HMM E-Value=2.5e-15)                   28   6.2  
SB_46488| Best HMM Match : DUF298 (HMM E-Value=6.3)                    27   8.2  
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.2  

>SB_9725| Best HMM Match : GETHR (HMM E-Value=0.00026)
          Length = 338

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 19/50 (38%), Positives = 22/50 (44%)
 Frame = +2

Query: 419 TSGSNVPPGAFPGGETEDGEPLYIGRVRHEGSLTTGKVQQSHGVCYISFG 568
           TSG       F  GE   GE    G VR   + TTG+ Q+  GV   S G
Sbjct: 126 TSGEVRQGETFASGEVRQGETFTSGEVRQGETFTTGEEQKGRGVITTSAG 175



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 419 TSGSNVPPGAFPGGETEDGEPLYIGRVRHEGSLTTGKVQQ 538
           TSG       F  GE   GE    G VR   + T+G+V+Q
Sbjct: 71  TSGEVRQGETFTSGEVRQGETFTSGEVRQGETFTSGEVRQ 110



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 419 TSGSNVPPGAFPGGETEDGEPLYIGRVRHEGSLTTGKVQQ 538
           TSG       F  GE   GE    G VR   + T+G+V+Q
Sbjct: 82  TSGEVRQGETFTSGEVRQGETFTSGEVRQGETFTSGEVRQ 121



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 419 TSGSNVPPGAFPGGETEDGEPLYIGRVRHEGSLTTGKVQQ 538
           TSG       F  GE   GE    G VR   + T+G+V+Q
Sbjct: 93  TSGEVRQGETFTSGEVRQGETFTSGEVRQGETFTSGEVRQ 132



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 419 TSGSNVPPGAFPGGETEDGEPLYIGRVRHEGSLTTGKVQQ 538
           TSG       F  GE   GE    G VR   + T+G+V+Q
Sbjct: 115 TSGEVRQGETFTSGEVRQGETFASGEVRQGETFTSGEVRQ 154


>SB_34205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 759

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +2

Query: 299 PRSLVNSFLLMVALTFHX--GGIEHGKPQYQILVGGPNNWVPTSGSNVPPGAFPGGETED 472
           PR+  N+++  VAL FH   G I          V   N  +P SG++  PG   G    D
Sbjct: 624 PRNTDNAWIETVALNFHDETGDILQSVTLKVGHVIYGNVLIP-SGTSSFPGLSQGEARHD 682

Query: 473 GEPLYIGRVRHEG 511
           G+  + G+ RH+G
Sbjct: 683 GQARHDGQARHDG 695


>SB_20077| Best HMM Match : zf-RanBP (HMM E-Value=0.24)
          Length = 346

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 516 RLPSWRTRPMYKGSPSSVSPPGNAPGGTLDPLVGTQLFGPPT 391
           + P+  T P   GSP++ +PP  AP  T  P V      PPT
Sbjct: 289 KTPAATTPPT--GSPAATTPPTAAPAATTPPTVAPAATTPPT 328


>SB_24696| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00023)
          Length = 547

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +2

Query: 377 QYQILVGGPNNWVPTSGSNVPPGAFPGGETEDGEPLYIGRVRHEGSLTTGK 529
           +Y+I  GG       +     PG FPGG+    E ++   VR E  +  GK
Sbjct: 151 RYRIETGGGQGGTHNASYGTYPGIFPGGKGATMEGIFQITVRTELKIVIGK 201


>SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)
          Length = 382

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -2

Query: 409 VVWAAY*DLVLRLSMFNT-TXMERKRNHEKERVYQGSWHL-REQHEPHTEVLLSSPVLPQ 236
           ++WA Y D  +  +  NT   +  KR H+ E  +Q   +L R    PH E+LL  P  PQ
Sbjct: 35  ILWATYSDYFV--AYHNTRAFLRHKREHDFE--FQVFVNLQRGSRYPHMEMLLLRPPPPQ 90

Query: 235 RRQ 227
           + Q
Sbjct: 91  KSQ 93


>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 344  FHXGGIEHGKPQYQILVGGPNNWVPTSGSNVPPGAFPGGETEDGEPLYIGR 496
            ++ G ++ G P   +  G P+  VP+     P G  P G   DG+P Y+ +
Sbjct: 987  YNPGQVQPGYPG-AMTPGAPSPGVPSPTGLPPSGPPPTGPPADGDPEYLSQ 1036


>SB_23942| Best HMM Match : 5-nucleotidase (HMM E-Value=4)
          Length = 735

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 278 LVLFTKVPRSLVNSFLLMVALTFHXGGIEHGKPQYQ 385
           ++L+T V  SL+N  LLM    +H G  E  K Q++
Sbjct: 640 ILLYTSVAVSLLNLVLLMAYACYHYGVFERLKHQHR 675


>SB_54954| Best HMM Match : zf-RanBP (HMM E-Value=2.1)
          Length = 172

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 516 RLPSWRTRPMYKGSPSSVSPPGNAPGGTLDPLVGTQLFGPPT 391
           + P+  T P   G+P++ +PP  AP  T  P        PPT
Sbjct: 114 KTPAATTPPT--GAPAATTPPTAAPAATTPPTAAPAATTPPT 153


>SB_47880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 516 RLPSWRTRPMYKGSPSSVSPPGNAPGGTLDPLVGTQLFGPPT 391
           + P+  T P   G+P++ +PP  AP  T  P        PPT
Sbjct: 181 KTPAATTPPT--GAPAATTPPTAAPAATTPPTAAPAATTPPT 220


>SB_44302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 516 RLPSWRTRPMYKGSPSSVSPPGNAPGGTLDPLVGTQLFGPPT 391
           + P+  T P   G+P++ +PP  AP  T  P        PPT
Sbjct: 4   KTPAATTPPT--GAPAATTPPTAAPAATTPPTAAPAATTPPT 43


>SB_42153| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 516 RLPSWRTRPMYKGSPSSVSPPGNAPGGTLDPLVGTQLFGPPT 391
           + P+  T P   G+P++ +PP  AP  T  P        PPT
Sbjct: 67  KTPAATTPPT--GAPAATTPPTAAPAATTPPTAAPAATTPPT 106


>SB_49160| Best HMM Match : IBR (HMM E-Value=2.5e-15)
          Length = 582

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +2

Query: 443 GAFPGGETEDGEPLYIGRVRHEGSLTTGKVQ 535
           G FPGGE  DG   +IG    EGS     VQ
Sbjct: 143 GLFPGGERSDGGQHFIG--EPEGSSVAAAVQ 171


>SB_46488| Best HMM Match : DUF298 (HMM E-Value=6.3)
          Length = 175

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +3

Query: 411 GFLPVDPTSRQVHSPVEKLKMENLYTLAVSATKVASPPARFNSLTASATFRLV 569
           G L   PT R +  P E      L  L  + +    P  R NSLT  A  +L+
Sbjct: 2   GKLSSHPTKRLIQPPKECAVHWTLRLLVKTESSTRKPYLRLNSLTTKALIQLL 54


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 513  LPSWRTRPMYKGSPSSVSPPGNAPGGTLDPLV-GTQLF 403
            +PS  + P Y  S  ++ PP   P  T  P++  TQ++
Sbjct: 1838 IPSVISSPQYSASKGTLGPPPLIPRATASPVIQSTQMY 1875


>SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -2

Query: 43 RAEFLQPGDPLV 8
          R EFLQPGDPLV
Sbjct: 31 RIEFLQPGDPLV 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,334,571
Number of Sequences: 59808
Number of extensions: 389506
Number of successful extensions: 1170
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)