Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0413
         (572 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL589986-1|CAH70024.1| 1943|Homo sapiens trichohyalin protein.         31   2.9  
AK090419-1|BAC03400.1|  266|Homo sapiens FLJ00327 protein protein.     30   5.0  
BC141917-1|AAI41918.1|  198|Homo sapiens PRB1 protein protein.         29   8.8  
AL445669-3|CAH70747.1|   56|Homo sapiens novel protein protein.        29   8.8  
AJ318054-1|CAC39299.1|  826|Homo sapiens SRPK1a protein kinase p...    29   8.8  

>AL589986-1|CAH70024.1| 1943|Homo sapiens trichohyalin protein.
          Length = 1943

 Score = 31.1 bits (67), Expect = 2.9
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -2

Query: 346  ERKRNHEKERVYQGSWHLREQHEPHTEVLLSSPVLPQRRQEVLDLLKHQ 200
            ER+R+ E+ R  +  W L E+ +     L + P L ++ ++   LL+ +
Sbjct: 861  ERRRSQEQRRDQKWRWQLEEERKRRRHTLYAKPALQEQLRKEQQLLQEE 909


>AK090419-1|BAC03400.1|  266|Homo sapiens FLJ00327 protein protein.
          Length = 266

 Score = 30.3 bits (65), Expect = 5.0
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = +1

Query: 313 KLVPSHGCAYVPXGWY*TWKASIPDLSRRPKQLGSYQWIQR-PARCIPRWRN*RW 474
           K+ P   C   P G   +W  +  + SR P Q     W+Q  P R +  W    W
Sbjct: 212 KVSPPAWCPSPPSGSRPSWAPAHQEASRSPGQCQEVPWLQHCPCRRVAPWSQKPW 266


>BC141917-1|AAI41918.1|  198|Homo sapiens PRB1 protein protein.
          Length = 198

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 19/56 (33%), Positives = 21/56 (37%)
 Frame = +2

Query: 368 GKPQYQILVGGPNNWVPTSGSNVPPGAFPGGETEDGEPLYIGRVRHEGSLTTGKVQ 535
           GKPQ     GG     P  G N P G  P G+ + G P   G          GK Q
Sbjct: 95  GKPQGPPPQGGKPQGPPPQGGNKPQGPLPPGKPQ-GPPAQGGSKSQSARAPPGKPQ 149


>AL445669-3|CAH70747.1|   56|Homo sapiens novel protein protein.
          Length = 56

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 318 RSFSWLRLRSMXVVLNMESLNTRS 389
           R F+WLRL  + + L+++ LNTRS
Sbjct: 25  RCFTWLRLCQISMFLSLKCLNTRS 48


>AJ318054-1|CAC39299.1|  826|Homo sapiens SRPK1a protein kinase
           protein.
          Length = 826

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
 Frame = -3

Query: 504 WRTRPMYKGSPSSVSPPGNAPGGTLDPLVGTQ-LFGPPTKIWY*GFPCSIPPXWNVSATM 328
           W   P    SPS   PP  AP   L PL+G     G      +   P   P    + A  
Sbjct: 124 WAASPTPAASPSPQPPPRQAPQPGLAPLLGLHPHLGRLLSSTFALHPSLSPAVLALQARK 183

Query: 327 RRNEFTRDRGTFVNSTSH 274
           +R +  +D+    + T H
Sbjct: 184 KRTKAKKDKAQRKSETQH 201


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,976,289
Number of Sequences: 237096
Number of extensions: 2128764
Number of successful extensions: 13526
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13519
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5872755824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)