Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0413
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006723-3|AAF59427.1|  881|Caenorhabditis elegans Hypothetical ...    31   0.58 
Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    28   4.1  
Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AC006723-3|AAF59427.1|  881|Caenorhabditis elegans Hypothetical
           protein Y19D10B.4 protein.
          Length = 881

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +2

Query: 125 TQPPLATLEATEETYPLRLEEPVYGLMFQEVKYLLAPLWEDRTAQENLCMWLVLFTKVPR 304
           TQP L  ++  ++TYP +++     L+F +     A  W  R   +N    ++  + + R
Sbjct: 181 TQPVLTAIQNAQQTYP-KMQAHALVLVFTDSPASDATAWSHRFTDKNAEQSVLQISLIWR 239

Query: 305 SLVNSFLLMVALT-FHXGGIE 364
           S  + FL + A T F   G++
Sbjct: 240 SKYSFFLSLPARTNFLSNGVD 260


>Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical
           protein T21B4.2 protein.
          Length = 312

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 395 GGPNNWVPTSGSNVPPG--AFPGGETEDGEPLYIGRVRHEGSLTTGKVQQ 538
           G P N  P+ G+  PPG    PGG   DG+P   G     G++T    QQ
Sbjct: 190 GAPGN-TPSGGAAGPPGPPGPPGGPGNDGQPGGPGNPGAPGAVTEVPGQQ 238


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
 Frame = -3

Query: 480 GSPSSVSPPGNAPGG-TLDPLVGTQLFGPPTKIWY*GFPCSIPPXWNVSATMRRNEFTR 307
           G+P S  PP   PGG    P  G   +GPP      GFP    P    +     N F R
Sbjct: 418 GAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPT----GFPPVGAPPPGAAGAPGGNPFAR 472


>Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical
           protein C05D12.2 protein.
          Length = 1052

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +2

Query: 125 TQPPLATLEATEETYPLRLEEPVYGLMFQEVKYLLAPLWEDRTAQENLCMWLVLFTKVPR 304
           TQP L  ++  ++TYP +++     L+F +     A  W  R   +N    ++  + + R
Sbjct: 181 TQPVLTAIQNAQQTYP-KMKSHALVLVFTDSTSSDATAWSHRFTDKNSEQSVLQISLLWR 239

Query: 305 SLVNSFL-LMVALTFHXGGIE 364
           S  + FL L     F   G++
Sbjct: 240 SKYSFFLSLPSPANFSSNGVD 260


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/65 (26%), Positives = 21/65 (32%)
 Frame = -3

Query: 474 PSSVSPPGNAPGGTLDPLVGTQLFGPPTKIWY*GFPCSIPPXWNVSATMRRNEFTRDRGT 295
           P+ V  P   PG T  P+       PPT +     P  +P   N              GT
Sbjct: 455 PTVVLAPPTTPGPTFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPPANPTTATPTTVGT 514

Query: 294 FVNST 280
              ST
Sbjct: 515 MTPST 519


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/44 (29%), Positives = 17/44 (38%)
 Frame = -3

Query: 474 PSSVSPPGNAPGGTLDPLVGTQLFGPPTKIWY*GFPCSIPPXWN 343
           P+ V  P   PG T  P+       PPT +     P  +P   N
Sbjct: 455 PTVVLAPPTTPGPTFYPVTTVSTMSPPTTVTVPTTPTPVPTTTN 498


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/44 (29%), Positives = 17/44 (38%)
 Frame = -3

Query: 474 PSSVSPPGNAPGGTLDPLVGTQLFGPPTKIWY*GFPCSIPPXWN 343
           P+ V  P   PG T  P+       PPT +     P  +P   N
Sbjct: 455 PTVVLAPPTTPGPTFYPVTTVSTMSPPTTVTVPTTPTPVPTTTN 498


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,191,302
Number of Sequences: 27780
Number of extensions: 289440
Number of successful extensions: 958
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)