Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0413
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   1.6  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   6.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   6.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.7  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +2

Query: 377 QYQILVGGPNNW-VPTSGSNVPPGAFPGGETEDGEPLYIGRVRHE 508
           Q   L  G   W +P+ G +  PG     E ++     IG+ +HE
Sbjct: 229 QPTFLCKGDGKWYLPSGGCHCKPGYQADVEKQECTECPIGKFKHE 273


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 470 DGEPLYIGRVRHEGSLTTGKV 532
           DGEP+ I    H G + TG +
Sbjct: 504 DGEPVKITIGIHSGEVVTGVI 524


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 456  PGNAPGGTLDPLVG 415
            PGN   GT+ P VG
Sbjct: 1751 PGNGHSGTMGPPVG 1764


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 470 DGEPLYIGRVRHEGSLTTGKV 532
           DGEP+ I    H G + TG +
Sbjct: 504 DGEPVKITIGIHSGEVVTGVI 524


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 461 ETEDGEPLYI 490
           E  DGEPLY+
Sbjct: 941 EISDGEPLYV 950


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,546
Number of Sequences: 438
Number of extensions: 3339
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)