Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0413
(572 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 31 0.72
At5g41250.1 68418.m05013 exostosin family protein contains Pfam ... 30 0.95
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel... 29 1.7
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ... 29 2.9
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s... 28 3.8
At5g07980.1 68418.m00928 dentin sialophosphoprotein-related cont... 28 5.1
At1g43860.1 68414.m05053 expressed protein 28 5.1
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 27 6.7
At5g54990.1 68418.m06848 zinc finger (C3HC4-type RING finger) fa... 27 8.9
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 30.7 bits (66), Expect = 0.72
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = -2
Query: 328 EKERVYQGS--WHLREQHEPHTEVLLSSPVLPQRRQEVLDLLKHQPIYRLLQTEGVRFLR 155
E++R G + L EQ EP + ++ +L + EVL LL+ + TE + LR
Sbjct: 587 EQQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTEAMDVLR 646
Query: 154 SLQGSQGG 131
S+ Q G
Sbjct: 647 SVAQQQAG 654
>At5g41250.1 68418.m05013 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 561
Score = 30.3 bits (65), Expect = 0.95
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -2
Query: 313 YQGSWHLREQHEPHTEVLLSSPVLPQRRQEVLDLLK 206
YQ +WHL E H ++ V +S + ++R V+++LK
Sbjct: 473 YQYAWHLPEDHRKYS-VYISEQDVKEKRVNVVEILK 507
>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
trafficking regulator - Bos taurus, EMBL: AF114785
Length = 3471
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = +2
Query: 344 FHXGGIEHGKPQYQILVGGPNNWVPTSGSNVPPGAFPGGETEDGEPLYIGRVRHEGSLTT 523
F I +G P Y L + + + SN +F G ETE+G+ ++ V + +
Sbjct: 1139 FSVNAISNGSPSYAELYFQEDGILTLATSNSNSLSFSGLETEEGKWHHLAVVHSKPNALA 1198
Query: 524 GKVQQSHGVCYI 559
G Q S YI
Sbjct: 1199 GLFQASVAYVYI 1210
>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
PF00069: Protein kinase domain
Length = 710
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = +2
Query: 365 HGKPQYQILVGGP----NNWVPTSGSNVPPGAFPGG 460
H P GGP + VP+SG++VPP A GG
Sbjct: 194 HALPPKSTAAGGPLTSPSRGVPSSGNSVPPPANSGG 229
>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
similarity to flagelliform silk protein [Nephila
clavipes] gi|7106224|gb|AAF36090
Length = 1504
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 468 SVSPPGNAPGGTLDPLVGTQLFGPPTKIWY*GFPCSIPP 352
S+SP G +P P+ GT + GPP + G P + P
Sbjct: 965 SISPFGISPSSIDSPVAGTSIGGPPDEGASDGGPPDVGP 1003
>At5g07980.1 68418.m00928 dentin sialophosphoprotein-related contains
weak similarity to Swiss-Prot:Q9NZW4 dentin
sialophosphoprotein precursor [Homo sapiens]
Length = 1501
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 450 SPVEKLKMENLYTLAVSATKVASPPARFNSLTASATFRLV 569
SP K K +YT + + PPAR SL AS+ + V
Sbjct: 1328 SPPIKSKRRLVYTTQLMQQLCSPPPARVISLVASSNYEFV 1367
>At1g43860.1 68414.m05053 expressed protein
Length = 370
Score = 27.9 bits (59), Expect = 5.1
Identities = 20/57 (35%), Positives = 25/57 (43%)
Frame = -2
Query: 358 TTXMERKRNHEKERVYQGSWHLREQHEPHTEVLLSSPVLPQRRQEVLDLLKHQPIYR 188
T M++ N E +R Y S R HE H V S Q + +L KH PI R
Sbjct: 115 TIVMQKTINPETQRPYTISMVERLMHEIHFAVDPHSNSKKQALDVIRELQKHFPIKR 171
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 368 GKPQYQILVGGPNNWVPTSG--SNVPPGAFPGGETEDGEPLYIG 493
G+P LVGG +++ G ++ PPG P G P+ G
Sbjct: 127 GRPSTGPLVGGGSSFPQPGGFPASGPPGGVPSGPPSGARPIGFG 170
>At5g54990.1 68418.m06848 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 226
Score = 27.1 bits (57), Expect = 8.9
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -2
Query: 274 HTEVLLSSPVLPQRRQEVLDLLKHQPIYRLLQTEGVRFLRSLQGSQGGLR 125
H ++LS+ LPQ QE L R + TE V+F G+ GGL+
Sbjct: 101 HVMIILSAMYLPQTIQERL--------VRYISTESVKFRNRRCGTGGGLK 142
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,706,832
Number of Sequences: 28952
Number of extensions: 275294
Number of successful extensions: 855
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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