Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0412
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0827 + 32260313-32260525,32261862-32262716 47 1e-05
07_01_0496 - 3730822-3731280 46 3e-05
07_01_0493 - 3715677-3715907,3716675-3716861,3717631-3717818 44 1e-04
08_02_0786 + 21198247-21198921 44 1e-04
01_06_0508 - 29897536-29897982 42 3e-04
09_04_0363 + 16957949-16958361,16958524-16958527 41 7e-04
09_04_0568 + 18591757-18592251 40 0.002
06_03_0745 + 24109406-24109921 40 0.002
02_01_0715 - 5346036-5346557 40 0.002
03_06_0270 - 32768979-32769488 39 0.003
08_02_1177 + 24946763-24947275 39 0.004
02_04_0078 + 19507705-19508169 39 0.004
03_06_0269 - 32761354-32761857,32762094-32762190,32762387-327624... 38 0.005
07_01_0492 - 3708379-3708864 36 0.028
01_06_1213 - 35466954-35467592 29 3.2
04_03_0289 + 13972020-13972077,13972444-13973301,13973850-139742... 29 4.2
12_02_0474 + 19482150-19482152,19482205-19482336,19482513-194826... 28 7.4
04_04_0383 - 24851496-24851681,24851785-24851882,24851964-248520... 28 7.4
08_01_0963 - 9661699-9661760,9662095-9662818,9662860-9663265,966... 27 9.8
>01_06_0827 + 32260313-32260525,32261862-32262716
Length = 355
Score = 46.8 bits (106), Expect = 1e-05
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +2
Query: 515 ERESNPMEALCRSGCGFYGNPSTDGLCSVCFKE 613
++ S LC SGCGFYGNP+T +CSVC+++
Sbjct: 195 QQASAGQPVLCASGCGFYGNPATLDMCSVCYRQ 227
>07_01_0496 - 3730822-3731280
Length = 152
Score = 46.0 bits (104), Expect = 3e-05
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +2
Query: 512 MERESNPMEALCRSGCGFYGNPSTDGLCSVCFKE 613
M+ + A+C +GCGF+G+ +TDGLCS C+K+
Sbjct: 7 MQARNGGGAAMCAAGCGFFGSAATDGLCSKCYKQ 40
>07_01_0493 - 3715677-3715907,3716675-3716861,3717631-3717818
Length = 201
Score = 44.0 bits (99), Expect = 1e-04
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +2
Query: 539 ALCRSGCGFYGNPSTDGLCSVCFKE 613
A+C +GCGF+G+ +T GLCS C+KE
Sbjct: 15 AMCAAGCGFFGSAATGGLCSKCYKE 39
>08_02_0786 + 21198247-21198921
Length = 224
Score = 43.6 bits (98), Expect = 1e-04
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +2
Query: 539 ALCRSGCGFYGNPSTDGLCSVCFKEALK 622
ALC SGCGF+G+ T+ +CS C+++ LK
Sbjct: 79 ALCSSGCGFFGSKETNNMCSKCYRDHLK 106
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +2
Query: 539 ALCRSGCGFYGNPSTDGLCSVCFKEALK-KKQQPPA 643
++C +GCGF+G+ +T LCS C+++ LK PPA
Sbjct: 19 SMCANGCGFFGSEATKKLCSKCYRDQLKAAPSSPPA 54
>01_06_0508 - 29897536-29897982
Length = 148
Score = 42.3 bits (95), Expect = 3e-04
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 515 ERESNPMEALCRSGCGFYGNPSTDGLCSVCFKEALKKKQQPPA 643
ER+ C +GCGF+G+ T GLCS C+++ + + P+
Sbjct: 6 ERQDERPPLPCANGCGFFGSADTRGLCSKCYRQTVMSQASAPS 48
>09_04_0363 + 16957949-16958361,16958524-16958527
Length = 138
Score = 41.1 bits (92), Expect = 7e-04
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = +2
Query: 542 LCRSGCGFYGNPSTDGLCSVCFKEALKK 625
+C +GCGF+G+ +T LCS C+++ LK+
Sbjct: 1 MCTNGCGFFGSEATKNLCSKCYRDQLKE 28
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 539 ALCRSGCGFYGNPSTDGLCSVCFKEALKKKQQPPAT 646
ALC S CGF+ + T +CS C+++ LK AT
Sbjct: 61 ALCASSCGFFSSKETKNMCSKCYRDHLKATSPATAT 96
>09_04_0568 + 18591757-18592251
Length = 164
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +2
Query: 530 PMEALCRSGCGFYGNPSTDGLCSVCFKEALKKKQQP 637
P LC + CGF GNP+T LC CF A P
Sbjct: 17 PEITLCANSCGFPGNPATQNLCQNCFLAATASTSSP 52
>06_03_0745 + 24109406-24109921
Length = 171
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +2
Query: 542 LCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 634
LC + CGF+G+ +T +CS C KE + K++Q
Sbjct: 16 LCINNCGFFGSAATMNMCSKCHKEMIMKQEQ 46
>02_01_0715 - 5346036-5346557
Length = 173
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +2
Query: 542 LCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 634
LC + CGF+G+ +T +CS C KE + K++Q
Sbjct: 16 LCINNCGFFGSAATMNMCSKCHKEMIMKEEQ 46
>03_06_0270 - 32768979-32769488
Length = 169
Score = 39.1 bits (87), Expect = 0.003
Identities = 12/25 (48%), Positives = 21/25 (84%)
Frame = +2
Query: 539 ALCRSGCGFYGNPSTDGLCSVCFKE 613
A+C +GCGF+G+ +T+ +CS C++E
Sbjct: 22 AMCVTGCGFFGSEATNNMCSRCYRE 46
>08_02_1177 + 24946763-24947275
Length = 170
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +2
Query: 530 PMEALCRSGCGFYGNPSTDGLCSVCFKEA 616
P LC + CGF GNP+T+ LC CF A
Sbjct: 17 PEMTLCANSCGFPGNPATNNLCQNCFLAA 45
>02_04_0078 + 19507705-19508169
Length = 154
Score = 38.7 bits (86), Expect = 0.004
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 542 LCRSGCGFYGNPSTDGLCSVCFKEALKKKQQPP 640
LC + CGF+G+P+T LCS C+++ ++ P
Sbjct: 14 LCANNCGFFGSPATLDLCSKCYRDRQGRESTAP 46
>03_06_0269 -
32761354-32761857,32762094-32762190,32762387-32762421,
32763035-32763040
Length = 213
Score = 38.3 bits (85), Expect = 0.005
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +2
Query: 542 LCRSGCGFYGNPSTDGLCSVCFKEALKKK 628
LC + CGF+G+ T+ +CS C+++ +K K
Sbjct: 76 LCVNNCGFFGSRMTENMCSKCYRDTVKAK 104
>07_01_0492 - 3708379-3708864
Length = 161
Score = 35.9 bits (79), Expect = 0.028
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +2
Query: 542 LCRSGCGFYGNPSTDGLCSVCFKEALK 622
LC + CGF+G+ T+ +CS C+++ +K
Sbjct: 22 LCVNNCGFFGSSMTNNMCSKCYRDFVK 48
>01_06_1213 - 35466954-35467592
Length = 212
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 551 SGCGFYGNPSTDGLCSVCFKEA 616
SGC FYG PS G C ++A
Sbjct: 82 SGCAFYGQPSPPGPCPCPLRQA 103
>04_03_0289 +
13972020-13972077,13972444-13973301,13973850-13974235,
13974249-13974323,13975824-13976139,13976284-13977113
Length = 840
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +1
Query: 241 SKLSFSTTVCPSKVLTQK*RSYTTNKENCCAEHKPDVTWPTFESKLVR 384
S + T CP++ +T+K N CC + T F+ K V+
Sbjct: 168 SAVRLCTVTCPNEEITEKVARQNCNGTGCCTIELFEATLSAFQFKFVQ 215
>12_02_0474 +
19482150-19482152,19482205-19482336,19482513-19482602,
19482649-19482708,19482959-19483058,19483137-19483234,
19483351-19483525,19484167-19484270
Length = 253
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 495 HFNNKFQTLH*CLTSDCTKSTL 430
HF+ + TLH C TSDC K L
Sbjct: 165 HFSRPWFTLHPCGTSDCMKLLL 186
>04_04_0383 -
24851496-24851681,24851785-24851882,24851964-24852063,
24852741-24852899
Length = 180
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 495 HFNNKFQTLH*CLTSDCTKSTL 430
HF+ + TLH C TSDC K L
Sbjct: 123 HFSRPWFTLHPCGTSDCMKLLL 144
>08_01_0963 -
9661699-9661760,9662095-9662818,9662860-9663265,
9663488-9665037
Length = 913
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 281 TFEGHTVVEKESFEPNKCLSKCAVPSAHKQATPRLCGCS 165
T+E +++ SFE NK LS+ +PS+ + + G S
Sbjct: 32 TYEAEDILDLASFEGNKLLSQNPLPSSSSRNSTGCTGFS 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,042,559
Number of Sequences: 37544
Number of extensions: 313556
Number of successful extensions: 715
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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