Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0412
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45840| Best HMM Match : zf-AN1 (HMM E-Value=1.2e-20)                65   5e-11
SB_31180| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   8e-08
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)                34   0.12 
SB_954| Best HMM Match : Cys_knot (HMM E-Value=3.1)                    30   1.4  
SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)              30   1.9  
SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)           29   3.3  
SB_1105| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)            28   5.7  

>SB_45840| Best HMM Match : zf-AN1 (HMM E-Value=1.2e-20)
          Length = 187

 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 26/46 (56%), Positives = 36/46 (78%), Gaps = 2/46 (4%)
 Frame = +2

Query: 509 TMERESNPME--ALCRSGCGFYGNPSTDGLCSVCFKEALKKKQQPP 640
           +MERE+N  +   LCR+GCGFYGN +TDG+CS C+K+ L++KQ  P
Sbjct: 4   SMERETNQTQQPTLCRNGCGFYGNSATDGMCSKCWKDVLRRKQSSP 49


>SB_31180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 22/40 (55%), Positives = 29/40 (72%)
 Frame = +2

Query: 515 ERESNPMEALCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 634
           ER +NP E  C++GCGFYGNP+  G CSVCF+E   K+ +
Sbjct: 13  ERLNNP-ELRCKTGCGFYGNPAWQGYCSVCFREVYMKQHK 51


>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
          Length = 1188

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 509 TMERESNPMEALCRSGCGFYGNPSTDGLCSVCFKEALKKK 628
           T +    P++  C  GC FY    T  LCS C  E L+K+
Sbjct: 292 TQDSSLTPVKC-CSQGCTFYATAETAFLCSKCLNEYLRKE 330



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +2

Query: 545 CRSG-CGFYGNPSTDGLCSVCFK 610
           CR+  C F+G PS DGLCS C++
Sbjct: 628 CRNNDCTFFGLPSQDGLCSSCYR 650



 Score = 32.3 bits (70), Expect = 0.35
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 533  MEALC-RSGCGFYGNPSTDGLCSVCFKEALK 622
            +++ C R GC  YG P T+G CS C  + ++
Sbjct: 1118 LQSKCVRPGCQMYGAPETNGYCSKCLMDNMR 1148



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 500  YSGTMERESNPMEALCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 634
            Y+ T    + P       GC  +G P+  G+C  CF +  +K+ Q
Sbjct: 1025 YNTTSTSYTQPGAPCQTKGCLKFGTPAKKGMCEKCFNKYQQKQAQ 1069



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 554 GCGFYGNPSTDGLCSVCFKEALKK 625
           GC F+GN   + LCS C+   L++
Sbjct: 905 GCQFFGNKEMNFLCSSCYARTLEE 928


>SB_954| Best HMM Match : Cys_knot (HMM E-Value=3.1)
          Length = 614

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 293 FCVRTFEGHTVVEKESFEPNKCLSKCAVPSAHKQAT 186
           FC +   G+T V+ ES  PN C S    PS    +T
Sbjct: 575 FCQKISTGNTQVQPESLSPNICCSHLPQPSCVSPST 610


>SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)
          Length = 1167

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 293  FCVRTFEGHTVVEKESFEPNKCLSKCAVPSAHKQAT 186
            FC +   G+T V+ ES  PN C S    PS    +T
Sbjct: 1093 FCQKISTGNTQVQPESLPPNICCSHLPQPSCVSTST 1128


>SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)
          Length = 1189

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/45 (44%), Positives = 23/45 (51%)
 Frame = +1

Query: 256 STTVCPSKVLTQK*RSYTTNKENCCAEHKPDVTWPTFESKLVRIV 390
           S  VC SK  TQ    Y+  K     EHKPDV WP+ +  LV  V
Sbjct: 384 SVAVCWSKE-TQL-SIYSLVKTAKDIEHKPDVVWPSAQPILVSTV 426


>SB_1105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
 Frame = -1

Query: 210 PFSSQTSDTTSVRL*SASTGITM-------NGYKTIICKTKLMYCYCE 88
           P S +  DT  +R  S   G+         + YK  +CKTKL  CY +
Sbjct: 171 PLSRKAKDTVKIRRLSIFQGLAWWHNQMPKSNYKQHLCKTKLHRCYMQ 218


>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
          Length = 416

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 223 PSAQSLQLTNKRHHVCAVVVSIHRHH 146
           PS+ S+ + +  HH  + ++ IH HH
Sbjct: 144 PSSSSIIIIHHHHHPSSSIIIIHHHH 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,054,050
Number of Sequences: 59808
Number of extensions: 395723
Number of successful extensions: 956
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)