Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0412
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71262-2|CAA95809.1|  189|Caenorhabditis elegans Hypothetical pr...    48   4e-06
AL031633-3|CAD56609.1|  545|Caenorhabditis elegans Hypothetical ...    36   0.019
U40060-4|AAY86193.1|  406|Caenorhabditis elegans Hypothetical pr...    29   2.9  

>Z71262-2|CAA95809.1|  189|Caenorhabditis elegans Hypothetical
           protein F22D6.2 protein.
          Length = 189

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = +2

Query: 512 MERESNPMEAL--CRSGCGFYGNPSTDGLCSVCFKEALKKKQ 631
           ME E    +    CR+GCGF+G  +T+G CS CFK  LK++Q
Sbjct: 1   MENEQQQAQTAPSCRAGCGFFGASATEGYCSQCFKNTLKRQQ 42


>AL031633-3|CAD56609.1|  545|Caenorhabditis elegans Hypothetical
           protein Y39A1A.5 protein.
          Length = 545

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 536 EALCRSGCGFYGNPSTDGLCSVCFK 610
           + LC +GCGFYG P  +  CS C++
Sbjct: 48  DLLCVNGCGFYGTPQWENRCSKCWR 72


>U40060-4|AAY86193.1|  406|Caenorhabditis elegans Hypothetical
           protein F38B6.8 protein.
          Length = 406

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 256 KKRVSN-QTNVFPSAQSLQLTNKRHHVCAVVVSIHRHHNEWLQN 128
           K  +SN +T +  ++Q+L  T    HV   V+ ++ +HN WLQN
Sbjct: 71  KLEISNDETVILHTSQTLFETPVHSHVDTNVLRVY-YHNSWLQN 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,203,698
Number of Sequences: 27780
Number of extensions: 295038
Number of successful extensions: 664
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)