Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0412
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.48 
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   4.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 116 LQIMVL*PFIVMPVDADYNRTDVVSLVCELKGLRT 220
           LQ+ V   +IV P D    R   V+L C+ +G+ T
Sbjct: 704 LQVKVPPRWIVEPTDVSVERNKHVALHCQAQGVPT 738


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 2   KFLDDFLSNF-YSKTNNH*ENLRMMWNNKHSQ*QYINFVLQI 124
           K +    +N+ YS  NN+       +NN + +  Y N+++ I
Sbjct: 313 KIISSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYYKNYIINI 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,185
Number of Sequences: 438
Number of extensions: 3510
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)