Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0412
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g12040.2 68417.m01916 zinc finger (AN1-like) family protein c... 40 0.001
At4g12040.1 68417.m01915 zinc finger (AN1-like) family protein c... 40 0.001
At1g12440.2 68414.m01438 zinc finger (AN1-like) family protein c... 40 0.001
At1g12440.1 68414.m01437 zinc finger (AN1-like) family protein c... 40 0.001
At4g22820.2 68417.m03293 zinc finger (AN1-like) family protein c... 39 0.003
At4g22820.1 68417.m03292 zinc finger (AN1-like) family protein c... 39 0.003
At2g27580.1 68415.m03342 zinc finger (AN1-like) family protein c... 39 0.003
At4g25380.1 68417.m03651 zinc finger (AN1-like) family protein c... 38 0.006
At1g51200.1 68414.m05759 zinc finger (AN1-like) family protein c... 38 0.008
At2g36320.1 68415.m04458 zinc finger (AN1-like) family protein c... 37 0.010
At4g14225.1 68417.m02195 zinc finger (AN1-like) family protein c... 36 0.023
At3g52800.1 68416.m05818 zinc finger (AN1-like) family protein c... 36 0.031
At3g12630.1 68416.m01572 zinc finger (AN1-like) family protein c... 34 0.094
At2g24650.1 68415.m02944 transcriptional factor B3 family protei... 27 8.2
At1g57670.1 68414.m06544 Toll-Interleukin-Resistance (TIR) domai... 27 8.2
>At4g12040.2 68417.m01916 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 175
Score = 39.9 bits (89), Expect = 0.001
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 542 LCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 634
LC +GCGF+G+PS LCS C++ ++ Q
Sbjct: 18 LCDNGCGFFGSPSNMNLCSKCYRSLRAEEDQ 48
>At4g12040.1 68417.m01915 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 175
Score = 39.9 bits (89), Expect = 0.001
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 542 LCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 634
LC +GCGF+G+PS LCS C++ ++ Q
Sbjct: 18 LCDNGCGFFGSPSNMNLCSKCYRSLRAEEDQ 48
>At1g12440.2 68414.m01438 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 168
Score = 39.9 bits (89), Expect = 0.001
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 542 LCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 634
LC GCGF+G+PS LCS C+++ ++Q
Sbjct: 18 LCVKGCGFFGSPSNMNLCSKCYRDIRATEEQ 48
>At1g12440.1 68414.m01437 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 168
Score = 39.9 bits (89), Expect = 0.001
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 542 LCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 634
LC GCGF+G+PS LCS C+++ ++Q
Sbjct: 18 LCVKGCGFFGSPSNMNLCSKCYRDIRATEEQ 48
>At4g22820.2 68417.m03293 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 176
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +2
Query: 503 SGTMERESNPMEALCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 634
S T + S P LC GCGF+G+PS LCS C++ ++ Q
Sbjct: 10 SFTQSQASEPK--LCVKGCGFFGSPSNMDLCSKCYRGICAEEAQ 51
>At4g22820.1 68417.m03292 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 176
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +2
Query: 503 SGTMERESNPMEALCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 634
S T + S P LC GCGF+G+PS LCS C++ ++ Q
Sbjct: 10 SFTQSQASEPK--LCVKGCGFFGSPSNMDLCSKCYRGICAEEAQ 51
>At2g27580.1 68415.m03342 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 163
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +2
Query: 542 LCRSGCGFYGNPSTDGLCSVCFKEALKKKQQPPAT 646
LC + CGF+G+ +T LCS CF++ L+ ++Q +T
Sbjct: 12 LCANNCGFFGSTATQNLCSKCFRD-LQHQEQNSST 45
>At4g25380.1 68417.m03651 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 130
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +2
Query: 527 NPMEAL-CRSGCGFYGNPSTDGLCSVCFKEAL 619
N EAL C GCG YG + LCS+C+K+++
Sbjct: 3 NETEALPCEGGCGLYGTRVNNNLCSLCYKKSV 34
>At1g51200.1 68414.m05759 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 173
Score = 37.5 bits (83), Expect = 0.008
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 542 LCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 634
LC + CGF+G+ +T +CS C K+ L +++Q
Sbjct: 17 LCTNNCGFFGSAATMNMCSKCHKDMLFQQEQ 47
>At2g36320.1 68415.m04458 zinc finger (AN1-like) family protein
contains Pfam domain, PF01428: AN1-like Zinc finger
Length = 161
Score = 37.1 bits (82), Expect = 0.010
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 542 LCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 634
LC + CGF+G+ +T LCS C+ + K+QQ
Sbjct: 15 LCVNNCGFFGSSATMNLCSNCYGDLCLKQQQ 45
>At4g14225.1 68417.m02195 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 125
Score = 35.9 bits (79), Expect = 0.023
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 539 ALCRSGCGFYGNPSTDGLCSVCFKEALK 622
+LC GCGF+ T LCS C+ + LK
Sbjct: 6 SLCIRGCGFFSTSQTKNLCSKCYNDFLK 33
>At3g52800.1 68416.m05818 zinc finger (AN1-like) family protein
contains Pfam domain, PF01428: AN1-like Zinc finger
Length = 170
Score = 35.5 bits (78), Expect = 0.031
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 542 LCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 634
LC + CGF G+ +T LCS C+ + K+QQ
Sbjct: 15 LCVNNCGFLGSSATMNLCSNCYGDLCLKQQQ 45
>At3g12630.1 68416.m01572 zinc finger (AN1-like) family protein
contains Pfam domain, PF01428: AN1-like Zinc finger
Length = 160
Score = 33.9 bits (74), Expect = 0.094
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 512 MERESNPMEALCRSGCGFYGNPSTDGLCSVCFKEAL 619
+E + LC + CG NP+T+ +C CF +L
Sbjct: 15 LETLTTTTTTLCTNNCGVTANPATNNMCQKCFNASL 50
>At2g24650.1 68415.m02944 transcriptional factor B3 family protein
low similarity to reproductive meristem gene 1 from
[Brassica oleracea var. botrytis] GI:3170424,
[Arabidopsis thaliana] GI:13604227; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 1440
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 259 TTVCPSKVLTQK*RSYTTNKENCCAEHKPDVTWPTFESKLVRIVITAEYWKTKRVQY*ST 438
TT S + T+ S KE+ +EHK + PT ++++V +T E K ++ S
Sbjct: 703 TTPMLSLLRTEFRSSKANEKESISSEHKTRESSPTIKNRIVTPALTPEDVKACKLVTSSN 762
Query: 439 FS 444
+S
Sbjct: 763 YS 764
>At1g57670.1 68414.m06544 Toll-Interleukin-Resistance (TIR)
domain-containing protein domain signature TIR exists,
suggestive of a disease resistance protein.
Length = 387
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 372 TFKCRPSYVWLMFGTAVFLVGSIRSLL 292
TF + WL FG+AV L+GS+ ++
Sbjct: 282 TFNIALALPWLWFGSAVELIGSVLGII 308
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,114,991
Number of Sequences: 28952
Number of extensions: 261163
Number of successful extensions: 588
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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