Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0411
(422 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9XY92 Cluster: Spermidine synthase; n=14; Eukaryota|Re... 50 1e-05
UniRef50_UPI0000F2D12E Cluster: PREDICTED: similar to spermidine... 41 0.012
UniRef50_P19623 Cluster: Spermidine synthase; n=81; Fungi/Metazo... 40 0.028
UniRef50_Q9NFS5 Cluster: Spermidine synthase; n=10; Plasmodium|R... 38 0.11
UniRef50_Q6C706 Cluster: Yarrowia lipolytica chromosome E of str... 35 0.60
UniRef50_Q5WNQ9 Cluster: Putative uncharacterized protein CBG078... 29 2.9
UniRef50_Q8TB69 Cluster: Zinc finger protein 519; n=5; Homo/Pan/... 32 4.2
UniRef50_Q9ZUB3 Cluster: Spermidine synthase 1; n=66; Magnolioph... 32 4.2
UniRef50_A2YKH0 Cluster: Putative uncharacterized protein; n=2; ... 32 5.6
>UniRef50_Q9XY92 Cluster: Spermidine synthase; n=14; Eukaryota|Rep:
Spermidine synthase - Dictyostelium discoideum (Slime
mold)
Length = 284
Score = 50.4 bits (115), Expect = 1e-05
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +2
Query: 320 MDKLKTNWFTESCDMWPGGTFSFEVKEVLHTEKS 421
MDK++ WF+E + WPG +FS EV++VLH EKS
Sbjct: 1 MDKIQNGWFSEISEFWPGNSFSLEVEKVLHHEKS 34
>UniRef50_UPI0000F2D12E Cluster: PREDICTED: similar to spermidine
synthase; n=1; Monodelphis domestica|Rep: PREDICTED:
similar to spermidine synthase - Monodelphis domestica
Length = 258
Score = 40.7 bits (91), Expect = 0.012
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 329 LKTNWFTESCDMWPGGTFSFEVKEVLHTEKS 421
++ WF E+C +WPG S +V E+LH ++S
Sbjct: 85 IREGWFRETCSLWPGQAMSLQVDELLHHQRS 115
>UniRef50_P19623 Cluster: Spermidine synthase; n=81; Fungi/Metazoa
group|Rep: Spermidine synthase - Homo sapiens (Human)
Length = 302
Score = 39.5 bits (88), Expect = 0.028
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 329 LKTNWFTESCDMWPGGTFSFEVKEVLHTEKS 421
++ WF E+C +WPG S +V+++LH +S
Sbjct: 16 IREGWFRETCSLWPGQALSLQVEQLLHHRRS 46
>UniRef50_Q9NFS5 Cluster: Spermidine synthase; n=10; Plasmodium|Rep:
Spermidine synthase - Plasmodium falciparum
Length = 321
Score = 37.5 bits (83), Expect = 0.11
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 341 WFTESCDMWPGGTFSFEVKEVLHTEKS 421
WF+E MWPG FS E+K++L+ KS
Sbjct: 43 WFSEFSIMWPGQAFSVEIKKILYETKS 69
>UniRef50_Q6C706 Cluster: Yarrowia lipolytica chromosome E of strain
CLIB 122 of Yarrowia lipolytica; n=5;
Saccharomycetales|Rep: Yarrowia lipolytica chromosome E
of strain CLIB 122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 300
Score = 35.1 bits (77), Expect = 0.60
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 329 LKTNWFTESCDMWPGGTFSFEVKEVLHTEKS 421
+K +WFTE D +PG +V+E+LH +S
Sbjct: 11 IKNSWFTEVSDSFPGQGLMLKVEEILHVSQS 41
>UniRef50_Q5WNQ9 Cluster: Putative uncharacterized protein CBG07888;
n=1; Caenorhabditis briggsae|Rep: Putative
uncharacterized protein CBG07888 - Caenorhabditis
briggsae
Length = 367
Score = 29.5 bits (63), Expect(2) = 2.9
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 365 WPGGTFSFEVKEVLHTEKS 421
WPG FS +VK+VL EKS
Sbjct: 45 WPGQAFSLQVKKVLFHEKS 63
Score = 22.2 bits (45), Expect(2) = 2.9
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 320 MDKLKTNWFTE 352
MDKL WFTE
Sbjct: 1 MDKLHKGWFTE 11
>UniRef50_Q8TB69 Cluster: Zinc finger protein 519; n=5;
Homo/Pan/Gorilla group|Rep: Zinc finger protein 519 -
Homo sapiens (Human)
Length = 540
Score = 32.3 bits (70), Expect = 4.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 216 CIPCSKYKNSFRPSYELNITELTFHNHDIYVQRYDSIH 103
CIP +KY++ F S N ++ F NHD + ++ S H
Sbjct: 139 CIPMNKYQHKFLKSVFCNKNQINF-NHDSDISKHHSTH 175
>UniRef50_Q9ZUB3 Cluster: Spermidine synthase 1; n=66;
Magnoliophyta|Rep: Spermidine synthase 1 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 334
Score = 32.3 bits (70), Expect = 4.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 341 WFTESCDMWPGGTFSFEVKEVLHTEKS 421
WF+E MWPG S +V++VL KS
Sbjct: 47 WFSEMSPMWPGEAHSLKVEKVLFQGKS 73
>UniRef50_A2YKH0 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 344
Score = 31.9 bits (69), Expect = 5.6
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 341 WFTESCDMWPGGTFSFEVKEVLHTEKS 421
WF+E MWPG S +V++VL KS
Sbjct: 34 WFSEISPMWPGEAHSLKVEKVLFQGKS 60
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 390,619,635
Number of Sequences: 1657284
Number of extensions: 6783915
Number of successful extensions: 13663
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13662
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 19810951153
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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